View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16032_low_11 (Length: 218)
Name: NF16032_low_11
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16032_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 51935142 - 51935344
Alignment:
| Q |
10 |
caaactttacctgataatccaaaaaagagcgcaacagcgccatttttgcccatattacgtccagaatgtagggagagaatattgcgcttcggcatgaggt |
109 |
Q |
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| T |
51935142 |
caaacttcacctgataatccaaaaaagagcgcaacatcgccatttttgcccatattacatccagaatgtagggagagaatattgcgcttcggcatgaggt |
51935241 |
T |
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| Q |
110 |
agtgcattaaactaaagagacctttcttcatttctccagcatattgtgtgccaaggatgaccatttcctttcttgtaagattcatgtctatgctagttga |
209 |
Q |
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| T |
51935242 |
agtgcattaaactaaagagacctttcttcatttctccagcatattgtgtgccaaggatgaccatttcctttcttgtaagattcatgtctatgctagttga |
51935341 |
T |
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| Q |
210 |
tga |
212 |
Q |
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| T |
51935342 |
tga |
51935344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 12995847 - 12996046
Alignment:
| Q |
17 |
tacctgataatccaaaaaagagcgcaacagcgccatttttgcccatattacgtccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcat |
116 |
Q |
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| T |
12995847 |
tacctgagagtccaaagaagagagcaacatcgccacctttgcccatattagaaccagagtgtaaggagagaatttggcgcttaggcatgagataatgcat |
12995946 |
T |
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| Q |
117 |
taaactaaagagacctttcttcatttctccagcatattgtgtgccaaggatgaccatttcctttcttgtaagattcatgtctatgctagttgatgatgtc |
216 |
Q |
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| T |
12995947 |
gacactgaaaagacctttcttcatttccccggcgtattgtgtgccgaggataaccatttcccttctagcaagattaagatcaatgctagtggaagatgtc |
12996046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 13070500 - 13070699
Alignment:
| Q |
17 |
tacctgataatccaaaaaagagcgcaacagcgccatttttgcccatattacgtccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcat |
116 |
Q |
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| T |
13070500 |
tacctgagagtccaaagaagagagcaacatcgccacctttgcccatattagaaccagagtgtaaggagagaatttggcgcttaggcatgagataatgcat |
13070599 |
T |
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| Q |
117 |
taaactaaagagacctttcttcatttctccagcatattgtgtgccaaggatgaccatttcctttcttgtaagattcatgtctatgctagttgatgatgtc |
216 |
Q |
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| T |
13070600 |
gacactgaaaagacctttcttcatttccccggcgtattgtgtgccgaggataaccatttcccttctagcaagattaagatcaatgctagtggaagatgtc |
13070699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 28137889 - 28138063
Alignment:
| Q |
17 |
tacctgataatccaaaaaagagcgcaacagcgccatttttgcccatattacgtccagaatgtagggagagaatattgcgcttcggcatgaggtagtgcat |
116 |
Q |
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||||||| | |||||| ||||| |||||| | |||| |||||||||||| | ||||| |||| ||| || || | ||||| |||||||| || ||||| |
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| T |
28137889 |
tacctgagagtccaaagaagagagcaacatcaccatctttgcccatattgctgccagagtgtaaggaaaggatttgacgcttaggcatgagataatgcat |
28137988 |
T |
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| Q |
117 |
taaactaaagagacctttcttcatttctccagcatattgtgtgccaaggatgaccatttcctttcttgtaagatt |
191 |
Q |
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| T |
28137989 |
gacactaaaaagacccttcttcatttcaccagcatattgtgttccaagaatgaccatttccttccttgaaagatt |
28138063 |
T |
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