View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16032_low_2 (Length: 543)
Name: NF16032_low_2
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16032_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 529
Target Start/End: Complemental strand, 7752686 - 7752176
Alignment:
| Q |
17 |
aaaatctataatgtgtaatcacttttgcagatatcctcatcaataatgacaggaagcctttttcttgtctcaatagcattctatcttgaggttagttagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7752686 |
aaaatctataatgtgtaatcacttttgcagatatcctcatcaataatgacaggaagcctttttcttgtctcaatagcattctattttgaggttagttagg |
7752587 |
T |
|
| Q |
117 |
taattattcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagagaaggattctcctctatacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7752586 |
taattattcaaagttgattcaatatcagaaccattactatgttaactagttcattatattgatactagggagttacagagaaggattctcctctatacag |
7752487 |
T |
|
| Q |
217 |
ctttttgggaatactttctgttgttgggcttgtggtatgttatgttgaactaagattgttgaacattgtttttgttccatgtgaattcaagagtttaagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7752486 |
ctttttgggaatactttctgttgttgggcttgtggtatgttatgttgaactaaaattgttgaacattgtttttgttccatgtgaattcaagtatttaagt |
7752387 |
T |
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| Q |
317 |
acttatcaattttatcaaatgtttctttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggtaaaatt |
416 |
Q |
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| T |
7752386 |
acttatcaattttatcaaatgtttctttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggtaaaatt |
7752287 |
T |
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| Q |
417 |
tagactttattttcacttcaccttataaacataagagattataaatcaatcataaggaatgttttagtgctatactaacaagatacttgtgtattcgcat |
516 |
Q |
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| T |
7752286 |
tagactttattttcacttcaccttataaacataagagattataaatcaa--acaattaatgttttagtgctatactaacaatatacttgtgtattcgcac |
7752189 |
T |
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| Q |
517 |
ggatcacttatat |
529 |
Q |
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||||||| ||||| |
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| T |
7752188 |
ggatcacatatat |
7752176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 53 - 247
Target Start/End: Complemental strand, 7823526 - 7823334
Alignment:
| Q |
53 |
tcatcaataatgacaggaagcctttttcttgtctcaatagcattctatcttgaggttagttaggtaattattcaaagttgattcaatatcagaaccatta |
152 |
Q |
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||||| ||||||| ||||||| |||||||||| |||||||||||||||||||| |||| |||| |||| |||| | |||||||| | || |||||| ||| |
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| T |
7823526 |
tcatctataatgataggaagcttttttcttgtttcaatagcattctatcttgacgttatttagctaatcattcgaggttgattctacattagaaccttta |
7823427 |
T |
|
| Q |
153 |
ctatgttaactagttcattatattgatactagggagttacagagaaggattctcctctatacagctttttgggaatactttctgttgttgggctt |
247 |
Q |
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| T |
7823426 |
ctatgttaactagttcattgtattgaggttaag--gttacgtacgaggattcttctctatacaactttctcggaataatttctgttggtgggctt |
7823334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 32932548 - 32932617
Alignment:
| Q |
342 |
tttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggta |
411 |
Q |
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|||| ||| |||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32932548 |
ttttaaggttatggtaattgggttctctctaggacttggaccaatcccttggcttataatgtctgaggta |
32932617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 32938477 - 32938546
Alignment:
| Q |
342 |
tttttaggctatggtgattggctactctcttggacttggaccaatcccttggcttataatgtctgaggta |
411 |
Q |
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|||||||||| |||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32938477 |
tttttaggctttggtaattggttttgctcttggcattggaccaatcccttggcttataatgtctgaggta |
32938546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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