View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16032_low_3 (Length: 477)
Name: NF16032_low_3
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16032_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 14334113 - 14333752
Alignment:
| Q |
11 |
atcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaatttcaaaag |
110 |
Q |
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| T |
14334113 |
atcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaatttcaaaag |
14334014 |
T |
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| Q |
111 |
aaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcacccttctctta |
210 |
Q |
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| T |
14334013 |
aaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcacccttctctta |
14333914 |
T |
|
| Q |
211 |
ggaagaagaa---gaagtcattgatttcacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatgatgaatgatgagtttata |
307 |
Q |
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| T |
14333913 |
ggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatgatgaatgatgagtttata |
14333814 |
T |
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| Q |
308 |
tgaattttagcgagtataagtatgcttcatgcattacattaccagattaattacctaaccgg |
369 |
Q |
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| T |
14333813 |
tgaattttagcgagtataagtatgcttcatgcattacattaccagattaattacctaaccgg |
14333752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 14333697 - 14333644
Alignment:
| Q |
424 |
gtgtgatgtatgtatctaactgtcgctaataatattgtgtaaaatttagttgaa |
477 |
Q |
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| T |
14333697 |
gtgtgatgtatgtatctaactgtcgctaataatattgtgtaaaatttagttgaa |
14333644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 53089404 - 53089052
Alignment:
| Q |
11 |
atcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaatttcaaaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53089404 |
atcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagtttcaaaag |
53089305 |
T |
|
| Q |
111 |
aaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcacccttctctta |
210 |
Q |
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| T |
53089304 |
aaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctca---------aggtgttgagaagttggaaaggcacccttctctta |
53089214 |
T |
|
| Q |
211 |
g---gaagaagaagaagtcattgatttcacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatgatgaatgatgagtttata |
307 |
Q |
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| |||||||||||||||||||||| ||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||| ||| |||||| || |
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| T |
53089213 |
ggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgagtgacgagtttgta |
53089114 |
T |
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| Q |
308 |
tgaattttagcgagtataagtatgcttcatgcattacattaccagattaattacctaaccgg |
369 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
53089113 |
tgaattttagcgagtataagtatgctatatgcatcacattaccagaataattacctaaccgg |
53089052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 53088987 - 53088942
Alignment:
| Q |
432 |
tatgtatctaactgtcgctaataatattgtgtaaaatttagttgaa |
477 |
Q |
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|||||||||||||| | |||||||||||||||||||| |||||||| |
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| T |
53088987 |
tatgtatctaactgcctctaataatattgtgtaaaatgtagttgaa |
53088942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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