View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16032_low_4 (Length: 427)
Name: NF16032_low_4
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16032_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 87 - 365
Target Start/End: Original strand, 38068773 - 38069052
Alignment:
| Q |
87 |
gaacttaattacttattacaatgaaataaactactattaccactatctagtgcatgtttggattaacggttgttttgacattatcacgctcactgaattt |
186 |
Q |
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| T |
38068773 |
gaacttaattacttattacaatgaaataaactactattactactatctagtgcatgtttggattaacggttgttttgaaattatcacgctcactgaattt |
38068872 |
T |
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| Q |
187 |
tgcaaaaatatatattttagagcttctacaaaatcacgatgcctctataacttcgacatatatacggtgataccaaatatgcactctagtcatgatatca |
286 |
Q |
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| T |
38068873 |
tgcaaaaatatatattatagagtttctacaaaatcacgatgcctctgtaacttcgacatacatacggtgataccaaatatgcactctagtcatgatatca |
38068972 |
T |
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| Q |
287 |
taatgaggaataatagaaaactttgttttgacttt-ctgattttcttgttaataatcatcatcctcaagaataagcatta |
365 |
Q |
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| T |
38068973 |
taatgaggaataatagaaaactttgttttgactttcctgattttcttgttaataatcatcatccacaagaataagcatta |
38069052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 38069311 - 38069364
Alignment:
| Q |
364 |
tagtactttcaaaattcttctaaactttctacaccatctaacaccatttctctg |
417 |
Q |
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| T |
38069311 |
tagtactttcaaaattcttctaaactttctacaccatctaacaccatttctctg |
38069364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38068687 - 38068722
Alignment:
| Q |
1 |
ccctctcttatctctatattcatccattggagagct |
36 |
Q |
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| T |
38068687 |
ccctctcttatctctatattcatccattggagagct |
38068722 |
T |
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