View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16032_low_6 (Length: 364)
Name: NF16032_low_6
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16032_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 36320865 - 36320509
Alignment:
| Q |
1 |
gatcttgccctcttctgaaattgcttaaatatcatgcatggtaccccacgcgatcttgcaacccagagaaaatggcgcttgctattgctgaaacgatgcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36320865 |
gatcttgccctcttctgaaattgcttaaatatcatgcatggtaccccacacgatcttgcaacccagagaaaatggcgcttgctattgctgaaacgatgcc |
36320766 |
T |
|
| Q |
101 |
tggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctcttgacattagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
36320765 |
tggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgtcctgttcttgaatctcttgacattagt |
36320666 |
T |
|
| Q |
201 |
gattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtcatatcgttataaatgtaaacaaatgagacaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36320665 |
gattgtcattatttgagtgaagatttgacgaaaaggtgcattgaccagatcaaggatttgcaactgtcatatcgttataaatgtaaacaaatgagacaac |
36320566 |
T |
|
| Q |
301 |
tattatgatgatcatgcttctttttggggacg----atatgatatcagatgatgatg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36320565 |
tattatgatgatcatgcttctttttggggacgatatatatgatatcagatgatgatg |
36320509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 69 - 279
Target Start/End: Complemental strand, 36327641 - 36327431
Alignment:
| Q |
69 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
168 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||||||||| |||||||||||||| |
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|
| T |
36327641 |
aaaatggcgtttgttattgctgaaacgatgcctggtctacgccatcttgatttgaaaggacacgagctcactgaacttggtgtgcttgccattattgata |
36327542 |
T |
|
| Q |
169 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtc |
268 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
36327541 |
gctgccctcttcttgagtctcttgacattagtgattgtcattatttgactgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcc |
36327442 |
T |
|
| Q |
269 |
atatcgttata |
279 |
Q |
| |
|
| |||||||| |
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|
| T |
36327441 |
aagtcgttata |
36327431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36333537 - 36333309
Alignment:
| Q |
1 |
gatcttgccctcttctgaaattgcttaaatatcatgcatggt---accccacgcgatcttgcaacccagagaaaatggcgcttgctattgctgaaacgat |
97 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| |||| || | |||| ||||||| || | || ||||||||||||||||||||||||||||| |
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|
| T |
36333537 |
gatcttgccatcttttgaaattgcttaaatatcatgtgtggtggtactctacgcaatcttgcgactctgataaaatggcgcttgctattgctgaaacgat |
36333438 |
T |
|
| Q |
98 |
gcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctcttgacatt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||| |
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|
| T |
36333437 |
gcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgtgctcgccattattgataaaggccctcttcttgagtctcttgacatt |
36333338 |
T |
|
| Q |
198 |
agtgattgtcattatttgagtgaagattt |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
36333337 |
cgtgattgtcattatttgaatgaagattt |
36333309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 272
Target Start/End: Complemental strand, 36336170 - 36335967
Alignment:
| Q |
69 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
168 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| ||||||||||||| |
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|
| T |
36336170 |
aaaatggcgtttcttattgctgaaacaatgcctggtctatgccatcttgatatgagaggacacaagctcactgaacttggcgtgctcgccattattgata |
36336071 |
T |
|
| Q |
169 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactgtc |
268 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||| | |||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
36336070 |
aatgccctcttcttgaatatcttgacattagtttttgtcttaatttgaatgaagatttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcc |
36335971 |
T |
|
| Q |
269 |
atat |
272 |
Q |
| |
|
|||| |
|
|
| T |
36335970 |
atat |
36335967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 69 - 328
Target Start/End: Complemental strand, 36325777 - 36325512
Alignment:
| Q |
69 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
168 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||| |
|
|
| T |
36325777 |
aaaatggcttttgttattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcagtgaacttcgtgtgctcgccataattgata |
36325678 |
T |
|
| Q |
169 |
aatgccctgttcttgaatctcttgacattagtgattg----tcattatttga--gtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgca |
262 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| ||||| | ||| ||||||||| ||||| ||||| || ||||||| |||||||| |
|
|
| T |
36325677 |
aatgccctcttcttgaatctcttgacattagtgtttgtctttcattgtatgaagatgaagatttgcataaaagttgcatcgacaagatcaatgatttgca |
36325578 |
T |
|
| Q |
263 |
actgtcatatcgttataaatgtaaacaaatgagacaactattatgatgatcatgcttctttttggg |
328 |
Q |
| |
|
|||| ||||| |||||| | ||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
36325577 |
actgacatattgttatacttataaaccaatgagacaactaatatgacgatcatgcttctttttggg |
36325512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 36313399 - 36313206
Alignment:
| Q |
69 |
aaaatggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgata |
168 |
Q |
| |
|
|||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
36313399 |
aaaacggcacttgttattgctgaaacaatgcctggtctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtgctcgccattattgata |
36313300 |
T |
|
| Q |
169 |
aatgccctgttcttgaatctcttgacattagtgattgtcattatttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgca |
262 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||||||| ||||| ||| |||||| |||||||| ||||| || |||||||| |
|
|
| T |
36313299 |
aatgccctcttcttgagtctcttgacattcgtgattgtcattatttgaatgaaggtttggagaaaagctgcattgatcagattaatgatttgca |
36313206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 30621598 - 30621491
Alignment:
| Q |
91 |
aaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttcttgaatctct |
190 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| | ||| || |||||||||| |||| ||| ||| ||| ||||| ||||||| ||||||||||||| |
|
|
| T |
30621598 |
aaacaatgcctgggctacgccatcttgatattcatggaaaccctctcagtgaagttgggttgcttgctattcttgatggatgccctcttcttgaatctct |
30621499 |
T |
|
| Q |
191 |
tgacatta |
198 |
Q |
| |
|
||||||| |
|
|
| T |
30621498 |
cgacatta |
30621491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 36309131 - 36309078
Alignment:
| Q |
213 |
ttgagtgaagatttaacgaaaaggtgcattgaacagatcaaggatttgcaactg |
266 |
Q |
| |
|
||||||||| ||| | ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
36309131 |
ttgagtgaaagtttgaagaaaaggtgcattgatcagatcaatgatttgcaactg |
36309078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 16053090 - 16052979
Alignment:
| Q |
83 |
tattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaatctcagtgaacttggtgtgcgtgccattattgataaatgccctgttctt |
182 |
Q |
| |
|
||||||||| |||||| || ||||||| |||||||||| || ||| |||| |||| | | |||| ||| |||||| |||||||||||||| ||||| |
|
|
| T |
16053090 |
tattgctgatacgatgactaatctatgctatcttgatatcaagggagacaacctcactaatgatggtttgctcgccattcttgataaatgcccttttctt |
16052991 |
T |
|
| Q |
183 |
gaatctcttgac |
194 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16052990 |
gaatctcttgac |
16052979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 42563630 - 42563569
Alignment:
| Q |
72 |
atggcgcttgctattgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaa |
133 |
Q |
| |
|
|||||| ||| ||| ||||||| |||| ||||||| |||||||||||||| || |||||||| |
|
|
| T |
42563630 |
atggcgtttgttatcgctgaaatgatgtctggtctgtgccatcttgatatcaatggacacaa |
42563569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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