View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16032_low_9 (Length: 254)
Name: NF16032_low_9
Description: NF16032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16032_low_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 10614161 - 10614399
Alignment:
| Q |
16 |
aatatgcagcagataaaatgcttttttgttttgtttactactgacaccgcgtatacacaccattgcggcctatggcgccataatggtgggcaccgatatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
10614161 |
aatatgcagcagataaaatgcttttttgttttgtttactactgacaccgcgtatacacaccattgcggcctatggcgccacaatggtgggcaccgacatt |
10614260 |
T |
|
| Q |
116 |
ccttcacaaattgcctatggctgttgttaaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10614261 |
ccttcacaaattgcctatggctgttgttaaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaata |
10614360 |
T |
|
| Q |
216 |
ttaaactattacttaggcaattatcatgcatagactgat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10614361 |
ttaaactattacttaggcaattatcatgcatagactgat |
10614399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 6415663 - 6415748
Alignment:
| Q |
144 |
aaaaatccgccattccaccatggcgccaccatttaacaattttagcattacactgtacattatataaaaatattaaactattactt |
229 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||| | ||||||||||||||||| |
|
|
| T |
6415663 |
aaaaatccggcattccaccattgcgccacaatttaacaactatagcattacactgttcactatatacagatattaaactattactt |
6415748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 51764832 - 51764765
Alignment:
| Q |
185 |
ttagcattacactgtacattatataaaaatattaaactattacttaggcaattatcatgcatagactgat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||| || ||||||||| ||||||||||| |
|
|
| T |
51764832 |
ttagcattacactgtacattatataaaaatattacac--ttacttggggaattatcatccatagactgat |
51764765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 28766232 - 28766187
Alignment:
| Q |
113 |
attccttcacaaattgcctatggctgttgt-taaaaatccgccatt |
157 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
28766232 |
attccttcacaaattgcctatggcggttgtccaaaaatccgccatt |
28766187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University