View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16033_high_10 (Length: 292)

Name: NF16033_high_10
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16033_high_10
NF16033_high_10
[»] chr3 (6 HSPs)
chr3 (16-248)||(17700069-17700301)
chr3 (16-248)||(19548559-19548791)
chr3 (39-158)||(52251289-52251408)
chr3 (16-134)||(9109419-9109537)
chr3 (246-274)||(18535432-18535460)
chr3 (246-274)||(18538790-18538818)
[»] chr5 (2 HSPs)
chr5 (16-248)||(9724756-9724988)
chr5 (30-135)||(26413175-26413280)
[»] chr4 (2 HSPs)
chr4 (16-248)||(30821812-30822044)
chr4 (16-200)||(48117201-48117385)
[»] chr8 (5 HSPs)
chr8 (16-248)||(12331689-12331921)
chr8 (16-248)||(30426272-30426504)
chr8 (84-248)||(5802190-5802355)
chr8 (49-169)||(35029088-35029208)
chr8 (22-79)||(3913305-3913362)
[»] chr7 (3 HSPs)
chr7 (16-248)||(41805832-41806061)
chr7 (16-248)||(30573417-30573649)
chr7 (16-248)||(25019391-25019623)
[»] chr2 (4 HSPs)
chr2 (16-248)||(10688396-10688628)
chr2 (16-237)||(43310094-43310313)
chr2 (16-167)||(26146054-26146205)
chr2 (16-130)||(43724333-43724447)
[»] scaffold0003 (2 HSPs)
scaffold0003 (16-174)||(366731-366889)
scaffold0003 (69-248)||(366891-367070)
[»] scaffold0061 (1 HSPs)
scaffold0061 (25-237)||(64725-64937)
[»] scaffold0017 (1 HSPs)
scaffold0017 (25-237)||(133695-133907)
[»] chr1 (1 HSPs)
chr1 (16-203)||(36685677-36685864)
[»] chr6 (1 HSPs)
chr6 (16-232)||(6995071-6995287)
[»] scaffold0070 (1 HSPs)
scaffold0070 (16-161)||(26482-26627)
[»] scaffold0190 (1 HSPs)
scaffold0190 (43-134)||(3790-3881)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 17700069 - 17700301
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  17700069 tgaaggaagtgatctgagacaataatggggtcggggcctgagacaccaagccaagaccgcacctgactccacaaagtgccataaaaactacaagaggtaa 17700168  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  17700169 ataaatgctgagaagtctcgatgtgtccgcgtcccaacaaacaccccgcatccgaagctgaaagaataccacgctgcatcagatttgatcgagtaggcag 17700268  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |||||||||||||||||||||| ||||||||||    
T  17700269 cttattttttaccaaccgccaagcaaatattga 17700301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 19548791 - 19548559
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||||||| |||||||||  ||||||||||||||||| |||||| ||||||||  ||||||||| |||||||||| |||||   |||    
T  19548791 tgaaggaaatgatctgagacagtaatggggtttgggcctgagacaccaagtcaagaccgcacctgaaaccacaaagtgccataaaaaccacaagaaataa 19548692  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    |||||||||||||||||||||  |  ||||| |||||||||||||||| ||||||| ||||||| ||||| || |||   || ||||| |  |||||||     
T  19548691 ataaatgctgagaagtctcgaattggccgcaccctaacaaacaacccgaatccgaatctaagaggataccgcgatgcgaaaggtttgaccttgtaggcaa 19548592  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    | ||||| ||||||||| |||| |||| |||||    
T  19548591 cctatttattaccaacctccaagcaaaaattga 19548559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 52251408 - 52251289
Alignment:
Q  39 aatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgctgagaagtctcgatg 138  Q
    ||||||||  |||||||||||||||||||||||| |||||| |  ||||||||| ||||| |||  |||||   ||||||| |||||||| ||||||| |    
T  52251408 aatggggtatgggcctgagacaccaagccaagaccgcaccttaaaccacaaagtgccatagaaatcacaagaaataaataagtgctgagatgtctcgacg 52251309  T
Q  139 tatccgcatcctaacaaaca 158  Q
    |  ||||| |||||||||||    
T  52251308 tggccgcaccctaacaaaca 52251289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 9109537 - 9109419
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||| || |||| ||| ||||||| ||||||||| ||||| ||||||||||||| | | ||||||  |||||| |  |||||||||  |||||   | |    
T  9109537 tgaagaaaatgatctgaaacaataaaggggtcgggtcctgaaacaccaagccaagcccgaacctgagaccacaacgatccataaaaatcacaagaaatga 9109438  T
Q  116 ataaatgctgagaagtctc 134  Q
    |||||||||||||||||||    
T  9109437 ataaatgctgagaagtctc 9109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 18535432 - 18535460
Alignment:
Q  246 tgatacaaatgaatagctttaggcctagt 274  Q
    |||||||||||||||||||||||||||||    
T  18535432 tgatacaaatgaatagctttaggcctagt 18535460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 18538790 - 18538818
Alignment:
Q  246 tgatacaaatgaatagctttaggcctagt 274  Q
    |||||||||||||||||||||||||||||    
T  18538790 tgatacaaatgaatagctttaggcctagt 18538818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 9724988 - 9724756
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||| |||||    
T  9724988 tgaaggaagtgatctgagacaataatggggtcggggcctgagacaccaagccaggacctcacctgactccacaaagtgccataaaaactacaagaggtaa 9724889  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  9724888 ataaatgttgagaagtctcgatgtggccgcatcctaacaaacaacccgcatccgaagctgagagaataccacactgcatcagatttgatcgagtaggcag 9724789  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |||||||||||||||||||||| |||| |||||    
T  9724788 cttattttttaccaaccgccaagcaaaaattga 9724756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 26413280 - 26413175
Alignment:
Q  30 tgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgctgagaa 129  Q
    ||||||| |||  ||||| || ||||||||||||||||||||| |||||| |  ||||||||  |||||||||  ||| |   | |||||||| ||||||    
T  26413280 tgagacattaagagggtctggtcctgagacaccaagccaagaccgcaccttatgccacaaagagccataaaaatcacacgtaatgaataaatgttgagaa 26413181  T
Q  130 gtctcg 135  Q
    ||||||    
T  26413180 gtctcg 26413175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 30822044 - 30821812
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||    
T  30822044 tgaaggaagtgatctgagacaataatggggtcggggcctgagacaccaagccaagaccgtacctgactccacaaagtgccataaaaactacaagaggtaa 30821945  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    |||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  30821944 ataaatgctgagaagtctcgatgtgtccgcatctcaacaaacaccccgcatccgaagctgaaagaataccatgctgcatcagatttgatcgagtaggcag 30821845  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |||||||||||||||||||||| ||||||||||    
T  30821844 cttattttttaccaaccgccaagcaaatattga 30821812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 48117201 - 48117385
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||| || |||| ||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||| |||||   |||    
T  48117201 tgaagaaaatgatctgatacagtaatggggtctgggcctgaaacaccaagccaagaccgcacctgacaccacaaagtgccataaaaaccacaagaaataa 48117300  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatt 200  Q
    ||||||| ||||| ||||| |  |  ||||| |||||||||||||||||||||| | ||||||||||||| || |||||||||||    
T  48117301 ataaatgttgagacgtctcaagttggccgcaccctaacaaacaacccgcatccgcatctaagagaataccgcgatgcatcagatt 48117385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 12331689 - 12331921
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||| ||||| |||||||||| |||||  ||||    
T  12331689 tgaaggaagtgatctgagacaataatggggtcggggcctgagacaccaagccaggacctcacctgactccataaagtgccataaaaacgacaagatgtaa 12331788  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    ||||||||||||||||||||||||  || || |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12331789 ataaatgctgagaagtctcgatgtggccacagcctaacaaacaacccgcacccgaagctgagagaataccacgctgcatcagatttgatcgagtaggcag 12331888  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    ||||||||||||||||| |||| |||| |||||    
T  12331889 cttattttttaccaaccaccaagcaaaaattga 12331921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 30426272 - 30426504
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||| ||| ||||||||||  ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||| |||||   |||    
T  30426272 tgaaggaaatgatctgatacagtaatggggtctaggcctgaaacaccaagccaagaccgcacctgacaccacaaagtgccataaaaaccacaagaaataa 30426371  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    ||||||| ||||| ||||| |  |  ||||| |||||||||||||||||||||| | |||||||||| || || |||||||| ||||| |  |||||||     
T  30426372 ataaatgttgagacgtctcaagttggccgcaccctaacaaacaacccgcatccgcatctaagagaattccgcgatgcatcaggtttgacctggtaggcaa 30426471  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |  ||  |||||||||| |||| |||| |||||    
T  30426472 ccgatcctttaccaacctccaagcaaaaattga 30426504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 248
Target Start/End: Complemental strand, 5802355 - 5802190
Alignment:
Q  84 ccacaaagtaccataaaaactacaaggggtaaataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaata 183  Q
    ||||||||| |||||||||| |||||   ||||||||||||||||||||||||| |  ||||| ||||||||||||| |||||||||| ||||||| |||    
T  5802355 ccacaaagtgccataaaaaccacaagaaataaataaatgctgagaagtctcgatttggccgcaacctaacaaacaactcgcatccgaatctaagaggata 5802256  T
Q  184 ccacgctgcatca-gatttgatcgagtaggcagcttattttttaccaaccgccaatcaaatattga 248  Q
    || || ||||||| | ||||| |  ||||||| | ||||||||||||||| |||| |||| |||||    
T  5802255 ccgcgatgcatcaggttttgaccttgtaggcaacctattttttaccaacctccaagcaaaaattga 5802190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 35029088 - 35029208
Alignment:
Q  49 gggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgctgagaagtctcgatgtatccgcatc 148  Q
    |||||||||||||||||||||||| |||||| |  ||||||||| ||||| |||  |||||   ||||||| || ||||| |||||||     ||||| |    
T  35029088 gggcctgagacaccaagccaagaccgcaccttaaaccacaaagtgccatagaaatcacaagaaataaataagtgttgagatgtctcgacaaggccgcacc 35029187  T
Q  149 ctaacaaacaacccgcatccg 169  Q
    |||||||||| ||||||||||    
T  35029188 ctaacaaacagcccgcatccg 35029208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 3913362 - 3913305
Alignment:
Q  22 aagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacct 79  Q
    ||||| ||||||||| |||  ||||| || ||||||||||||||||||||| ||||||    
T  3913362 aagtgctttgagacattaaaagggtctggtcctgagacaccaagccaagaccgcacct 3913305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 41806061 - 41805832
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||| | |||    
T  41806061 tgaaggaagtgatctgagacaataatggggtcggggactgagacaccaagcccagaccgcacctaactccacaaagtgccataaaaactacaagagataa 41805962  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    ||||||| |||||||||||||| | ||||   | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  41805961 ataaatgttgagaagtctcgatttgtccg---cgtaacaaacaacccgcatccgaagctgagagaataccacgctgcatcagatttgatcgtgtaggcaa 41805865  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |||||||||||||||||||||| ||||||||||    
T  41805864 cttattttttaccaaccgccaagcaaatattga 41805832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 30573649 - 30573417
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |   |||    
T  30573649 tgaaggaagtgatctgagacaataatggggtcagggcctaagacaccaagccaagaccgcacctgactccacaaagtgccataaaaactacacgaaataa 30573550  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    |||||||||||||||||||||| |  ||||| |||| ||||||||| || ||||||||| |||| ||||| |||||||||||||||||||| | || ||     
T  30573549 ataaatgctgagaagtctcgatttggccgcaccctagcaaacaacctgcgtccgaagctgagaggataccgcgctgcatcagatttgatcgtgcagacaa 30573450  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |||||||||||||||||||||| ||||||||||    
T  30573449 cttattttttaccaaccgccaaacaaatattga 30573417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 25019623 - 25019391
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| |  ||||||||| |||||||||| |||||   |||    
T  25019623 tgaaggaagtgatttgagacaataatggggtctgggcatgagacaccaagccaagaccgcaccttaaaccacaaagtgccataaaaaccacaagaaataa 25019524  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||||| | |||||||||||| ||||| || ||||||||||||||||| |||||||     
T  25019523 ataaatgctgagaagtctcgatttggccgcaccctaacaaacaacccgcgttcgaagctaagaggataccgcgatgcatcagatttgatcgtgtaggcaa 25019424  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    |  ||||||||||||||| ||| ||||||||||    
T  25019423 ccaattttttaccaaccgtcaagcaaatattga 25019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 10688396 - 10688628
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||| |  ||||||||  |||||||||| |||||   |||    
T  10688396 tgaaggaagtgatctgagacaacaatggggtctgggcctgagacaccaagccaagaccgcaccttaaaccacaaagagccataaaaaccacaagaaataa 10688495  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||||| |||||||||||||| ||||  || ||||||||||||||||| |||||||     
T  10688496 ataaatgctgagaagtctcgatttggccgcaccctaacaaacaacccgcgtccgaagctaagaggatacagcgatgcatcagatttgatcgtgtaggcaa 10688595  T
Q  216 cttattttttaccaaccgccaatcaaatattga 248  Q
    | |||| ||||||||||||||| ||||||||||    
T  10688596 cctattctttaccaaccgccaagcaaatattga 10688628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 43310094 - 43310313
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||| ||| |||||| ||| |||||||||||||||||||||||| |||||| || ||||||||| |||||||||| | |||    ||    
T  43310094 tgaaggaaatgatctgatacagtaatggtgtctgggcctgagacaccaagccaagaccgcaccttacaccacaaagtgccataaaaaccataagac--aa 43310191  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    ||||||||||||| |||||||| |  |||||||||||||||||||||||||||||| ||||||||||||| || |||||| | ||||| |  |||||||     
T  43310192 ataaatgctgagacgtctcgatatggccgcatcctaacaaacaacccgcatccgaatctaagagaataccgcgatgcatcgggtttgaccttgtaggcaa 43310291  T
Q  216 cttattttttaccaaccgccaa 237  Q
    | |||| |||||||||| ||||    
T  43310292 cctattctttaccaacctccaa 43310313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 26146054 - 26146205
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||| ||| ||||| |||| |||||||| ||||||||||| ||| | ||||||| ||||||||| |||||||||| |||||   |||    
T  26146054 tgaaggaaatgatctgatacagtaatgaggtctgggcctgaaacaccaagccaggaccgtacctgacaccacaaagtgccataaaaaccacaagaaataa 26146153  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatc 167  Q
    ||||||| ||||| ||||| |  |  || || ||||||||||||| ||||||    
T  26146154 ataaatgttgagacgtctcaagttggccacaccctaacaaacaactcgcatc 26146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 43724447 - 43724333
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||| | ||| ||||||||||| || || ||||||| |||||| |||||||| ||| ||  |||||| || |||||| ||  |||||   | |    
T  43724447 tgaaggaagtgctctgaaacaataatgggatctggacctgagataccaagtcaagactgaacccgagaccacaacgtgccataataatcacaagaaatga 43724348  T
Q  116 ataaatgctgagaag 130  Q
    |||||||||||||||    
T  43724347 ataaatgctgagaag 43724333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 366731 - 366889
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||   |||    
T  366731 tgaaggaagtgatctgagacaataatggggtcggggcctaagacaccaagccaagaccgcacctgactccacaaagtgccataaaaactacaagaaataa 366830  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagct 174  Q
    |||||||||||||||||||||| | || ||| |||||||||||||||||||| ||||||    
T  366831 ataaatgctgagaagtctcgatttgtctgcaccctaacaaacaacccgcatcggaagct 366889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 69 - 248
Target Start/End: Original strand, 366891 - 367070
Alignment:
Q  69 agactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatcc 168  Q
    |||| |||| |||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||| | || ||| ||| ||||||||||||||||     
T  366891 agaccgcacttgactccacaaagtgccataaaaactacaagaaataaataaatgctgagaagtctcgatttgtctgcaccctgacaaacaacccgcatct 366990  T
Q  169 gaagctaagagaataccacgctgcatcagatttgatcgagtaggcagcttattttttaccaaccgccaatcaaatattga 248  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||    
T  366991 gaagctgagagaataccacgttgcatcagatttgatcgtgtaggcaacttattttttaccaatcgccaagcaaatattga 367070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 64937 - 64725
Alignment:
Q  25 tgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgct 124  Q
    |||| ||| ||| |||||||||| || |||||||||||||| |||||| |||||| |  ||||||||| |||||||||| |||||   |||||||||| |    
T  64937 tgatctgaaacagtaatggggtctggacctgagacaccaagacaagaccgcaccttaaaccacaaagtgccataaaaaccacaagaaataaataaatgtt 64838  T
Q  125 gagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcagcttattttt 224  Q
    |||| ||||||| ||  ||||||||||||||||||| |||||||||| | ||||||| | | ||  ||||||||||||| |  ||||||| | |||| ||    
T  64837 gagatgtctcgacgtggccgcatcctaacaaacaactcgcatccgaatccaagagaacatcgcgacgcatcagatttgaccttgtaggcaacctattctt 64738  T
Q  225 taccaaccgccaa 237  Q
    |||||||| ||||    
T  64737 taccaacctccaa 64725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 133695 - 133907
Alignment:
Q  25 tgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgct 124  Q
    |||| ||| ||| |||||||||| || |||||||||||||| |||||| |||||| |  ||||||||| |||||||||| |||||   |||||||||| |    
T  133695 tgatctgaaacagtaatggggtctggacctgagacaccaagacaagaccgcaccttaaaccacaaagtgccataaaaaccacaagaaataaataaatgtt 133794  T
Q  125 gagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcagcttattttt 224  Q
    |||| ||||||| ||  ||||||||||||||||||| |||||||||| | ||||||| | | ||  ||||||||||||| |  ||||||| | |||| ||    
T  133795 gagatgtctcgacgtggccgcatcctaacaaacaactcgcatccgaatccaagagaacatcgcgacgcatcagatttgaccttgtaggcaacctattctt 133894  T
Q  225 taccaaccgccaa 237  Q
    |||||||| ||||    
T  133895 taccaacctccaa 133907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 36685677 - 36685864
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||| ||| |||||||||| |||||||| |||||||| |||||| ||||||||| ||||||||| |||||||||| |||||   |||    
T  36685677 tgaaggaaatgatctgatacagtaatggggtctgggcctgaaacaccaagtcaagaccgcacctgacaccacaaagtgccataaaaaccacaagaaataa 36685776  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttga 203  Q
    ||||||| ||||| ||||| |  |  ||||| ||||||||||||| |||||||| | |||||||||| || || |||||||| |||||    
T  36685777 ataaatgttgagacgtctcaagttggccgcaccctaacaaacaactcgcatccgcatctaagagaattccgcgatgcatcaggtttga 36685864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 6995287 - 6995071
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||| ||| |||||||||| ||| ||||||||||||||||| || ||| || |  ||||||||| ||| |||||  |||||   |||    
T  6995287 tgaaggaaatgatctgatacagtaatggggtctgggtctgagacaccaagccaataccgcatcttaaaccacaaagtgccacaaaaatcacaagaaataa 6995188  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacccgcatccgaagctaagagaataccacgctgcatcagatttgatcgagtaggcag 215  Q
    ||||||||||||||||||||||    ||||| |||||||||||||| ||| ||||| ||||||| ||||| || |||||||| ||||| |  |||||||     
T  6995187 ataaatgctgagaagtctcgattgggccgcaccctaacaaacaacctgcagccgaatctaagaggataccgcgatgcatcaggtttgaccttgtaggcaa 6995088  T
Q  216 cttattttttaccaacc 232  Q
    | ||| |||||||||||    
T  6995087 cctatcttttaccaacc 6995071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 26482 - 26627
Alignment:
Q  16 tgaaggaagtgatttgagacaataatggggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaa 115  Q
    |||||||| |||| ||| ||||||| ||||||||| ||||| || |||||||||| | | ||||||  |||||| |  |||||||||  |||||   | |    
T  26482 tgaaggaaatgatctgaaacaataaaggggtcgggacctgaaactccaagccaagcccgaacctgagaccacaacgagccataaaaatcacaagaaatga 26581  T
Q  116 ataaatgctgagaagtctcgatgtatccgcatcctaacaaacaacc 161  Q
    ||||||||||||||||||| |    |||||| ||||||||||||||    
T  26582 ataaatgctgagaagtctctacagctccgcaccctaacaaacaacc 26627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 3881 - 3790
Alignment:
Q  43 gggtcggggcctgagacaccaagccaagactgcacctgactccacaaagtaccataaaaactacaaggggtaaataaatgctgagaagtctc 134  Q
    ||||| ||||||||||| |||||||||||  ||||||||  ||| | ||| |||||||||  ||||| | | |||||||| |||||||||||    
T  3881 gggtctgggcctgagactccaagccaagagcgcacctgatgccaaagagttccataaaaatcacaagagatgaataaatgttgagaagtctc 3790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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