View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_high_13 (Length: 246)
Name: NF16033_high_13
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8778066 - 8778303
Alignment:
| Q |
1 |
tttccgtttcttctgaaacaccgttatttttgtggaactgacatcgactaaatcaccatctctttcataagaacgaagatgaacttcattaagaagccaa |
100 |
Q |
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| T |
8778066 |
tttccgtttcttctgaaacaccattatttttgtggaactgacatcaactaaatcaccatctctttcataagaacgaagatgaacttcattaagaagccaa |
8778165 |
T |
|
| Q |
101 |
cctctattcttaataaaaatttcaaacgattttcaaatactcgcatggaccaaaaatctaagtgattcgaaataaaatttccatgtgtattaaatatatg |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8778166 |
cctctattcttaataaaaatttcaaacgattctcaaatactcgcatggaccaaaaatctaagtgattcgaaataaaatttccatgtgtattaaatatatg |
8778265 |
T |
|
| Q |
201 |
aagcaatcgattgtagcaaattagttgtgttacctatg |
238 |
Q |
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||||| |||||||||||||||||| ||||||||||||| |
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| T |
8778266 |
aagcagtcgattgtagcaaattagctgtgttacctatg |
8778303 |
T |
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