View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_high_5 (Length: 467)
Name: NF16033_high_5
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Original strand, 6285635 - 6286099
Alignment:
| Q |
6 |
aatatataaagacatttggcaacggtattttagttttgggcatttctaacccttaaaagacatcacgatgcaacttatctnnnnnnntatatcaaataat |
105 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6285635 |
aatatataaagacatttgtcaacggtattttagttttgggcatttctaacccttaaaagacatcacgatgcaacttatctaaaaaaatatatcaaataat |
6285734 |
T |
|
| Q |
106 |
tttataaaaagagttgctacnnnnnnntaattcctactttaaagaaacaatgatgtgaaagttttactaataaaatgaaaagaatgnnnnnnn--gttgc |
203 |
Q |
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| T |
6285735 |
tttataaaaagagttgctacaaaaaa-taattcctactttaaagaaacaatgatgtgaaagttttactaatagaatgaaaagaatgtttgtttttgttgc |
6285833 |
T |
|
| Q |
204 |
taaattacaatttaggtcccttaagttattcttaagtttcactttgtcctttgagctatttttgttatgttttgaccaaataagcaacaaatgttattca |
303 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6285834 |
taaattacaatttagttcccttaagttattcttaagtttcactttgtcctttgagctatttttgttatgttttgaccaaataagcaacaaatgttattca |
6285933 |
T |
|
| Q |
304 |
tttttgt--------agttagaaaatttgcacagctcttctccaaatgagaaaaagtgtatgtgcatcttgcatgcctgccttctttatgaaaggtggat |
395 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6285934 |
tttttgttagttttaagttagaaaatttgcacagctcttctccaaatgagaaaaagtgtctgtgcatcttgcatgcctgccttctttatgaaaggtggat |
6286033 |
T |
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| Q |
396 |
aggtgttaaactatcttgcatgtcttcttcattctaaagttannnnnnngtttgtgctcttttaac |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6286034 |
aggtgttaaactatcttgcatgtcttcttcattctaaagttattttttggtttgtgctcttttaac |
6286099 |
T |
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