View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_high_7 (Length: 349)
Name: NF16033_high_7
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 38046334 - 38045997
Alignment:
| Q |
1 |
tttcacaggcaaaacattttcttgaacatggttattagctctatttagattttcaaatctctggactagagtttctgcagtaggctcttcgtcaaattca |
100 |
Q |
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| T |
38046334 |
tttcacaggcaaaacattttcttgaacatggttattagctctatttagattttcaaatctctggactagagtttctgcagtaggctcttcgtcaaattca |
38046235 |
T |
|
| Q |
101 |
tcctcagaatcccgcgagccttcacttccacaagaagaagccttctcttcatcatcttccaagtcaggaattcctccctccgtagcattccctatatgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38046234 |
tcctcagaatcccgcgagccttcacttccacaagaagaagccttctcttcatcatcttccaagtcaggaattcctccctcctcagcattccctatatgat |
38046135 |
T |
|
| Q |
201 |
gaggcatgcccttcggttcttgaaaagaaaattgatgatcaacaggattaaaaagaccgaagaaatcccattgtggagttccatcaggaacagaagagtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38046134 |
gaggcatgcccttcggttcttgaaaagaaaattgatgatcaacaggattaaaaagaccgaagaaatcccattgtggagttccatcaggaacagaagagtc |
38046035 |
T |
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| Q |
301 |
ttcaaatgcttctgtttcggacattctacttccatttt |
338 |
Q |
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| T |
38046034 |
ttcaaatgcttctgtttcggacattctacttccatttt |
38045997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 35591509 - 35591612
Alignment:
| Q |
204 |
gcatgcccttcggttcttgaaaagaaaattgatgatcaacaggattaaaaagaccgaagaaatcccattgtggagttccatcaggaacagaagagtcttc |
303 |
Q |
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|||||||||| ||||||||||||||||||||| |||| ||||| ||||||||| || |||||||| ||||||| ||| |||| |||||| ||||| |
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| T |
35591509 |
gcatgccctttccttcttgaaaagaaaattgatggtcaataggatgaaaaagaccaaaaaaatccca---tggagtttcatttggaagagaagaatcttc |
35591605 |
T |
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| Q |
304 |
aaatgct |
310 |
Q |
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| T |
35591606 |
atatgct |
35591612 |
T |
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