View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_low_1 (Length: 596)
Name: NF16033_low_1
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Original strand, 50458982 - 50459552
Alignment:
| Q |
11 |
ttattctgttaaaaaatttgagatcacttacacttggaagtactaaagtggatgaactgtttattacaagtctggtgtctaatttaggattagttgatga |
110 |
Q |
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| T |
50458982 |
ttattctgttcaaaaatttgagatcacttacacttggaagtactaaagtggatgaactgtttattacaagtctggtgtctaatttaggattacttgatga |
50459081 |
T |
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| Q |
111 |
gcttcacttaatatattgtgagttcaaatcatcaatgccaaagatagtgagttcatccttgagttatcttgaagttaaaaactgccatgtcgtatccaac |
210 |
Q |
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| T |
50459082 |
gcttcacttaatatattgtgagttcaaatcatcaatgccaaagatagtgagttcatccttgtgttatcttgaagttaaaaactgccatgtcgtatccaac |
50459181 |
T |
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| Q |
211 |
aacatcaaaaagggtgtaaacctttgttcattagattgccttaaactcacttcattggagtactttggtcctggtttggagaccttttacattaataccc |
310 |
Q |
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| T |
50459182 |
aacatcaaaaagggtgtaaacctttgttcactagattgccttaaactcacttcattggagtactttggtcctggtttggagaccttttacattaataccc |
50459281 |
T |
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| Q |
311 |
ctatgttaaagagaattcatataccggttatatctgacgaatatgttaatgcatttgcactcttgtcaactcttactgaacttgatattctgcaattgga |
410 |
Q |
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| T |
50459282 |
ctatgttaaagagaattcatataccggttatatctgacgaatatgttaatgcatttgcactcttgtcaactcttactgaacttgatattctgcaattgga |
50459381 |
T |
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| Q |
411 |
catctattcaatggttagtcgtaatgtgttggaacagtgagttctttttacatttctttgtctttttaatgatatattttgaatcttacacattcttgtt |
510 |
Q |
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| T |
50459382 |
catctattcaatggttagtcgtaatgtgttggaacagtgagttctttttacatttctttgtctttttaatgatatattttgaatcttacacattcttgtt |
50459481 |
T |
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| Q |
511 |
cttgttcaggtcaaacctttggtaaaaattactcaaccactcagacatcttaaacaattgaacttcatcat |
581 |
Q |
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| T |
50459482 |
cttgttcaggtcaaacctttggtaaaaatgactcaaccactcagacatcttaaacaattgaacttcatcat |
50459552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 500
Target Start/End: Complemental strand, 48453697 - 48453600
Alignment:
| Q |
401 |
tgcaattggacatctattcaatggttagtcgtaatgtgttggaacagtgagttctttttacatttctttgtctttttaatgatatattttgaatcttaca |
500 |
Q |
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| T |
48453697 |
tgcaattggacttctattcaaaggttagtaataaagtgttggaatagtgaat--tgttcacatttctttctcttttgaatgatatttttttaagcttaca |
48453600 |
T |
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