View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_low_15 (Length: 236)
Name: NF16033_low_15
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8777968 - 8777748
Alignment:
| Q |
1 |
actgcatactgtgtcataattcagtgataagtttaactgtacataaaaacattccctatgcaatgcatattcaaaaaccattagttccaaatcatagata |
100 |
Q |
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| T |
8777968 |
actgcatattgtgtcataattcagtgatatgtttaactgtacataaaaacattgcctatgcaatgcagattcaaaaaccattagttccaaatcatagata |
8777869 |
T |
|
| Q |
101 |
taagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaaccttcccaagaggctcactttctgcaaaaatgga |
200 |
Q |
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| T |
8777868 |
taagagatgccatttttatattttttgcaatatctctaaacatgattcgtcacgccaaggctgaaaccttcccaagaggctcactttctgcaaaaatgga |
8777769 |
T |
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| Q |
201 |
cagacaaaagtacatcaaaat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
8777768 |
cagacaaaagtacatcaaaat |
8777748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 8784626 - 8784498
Alignment:
| Q |
90 |
aatcatagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaaccttcccaagaggctcactttct |
189 |
Q |
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|||| |||||||||||||| || ||||| |||||||||| || ||| |||||||| |||||| ||||||||||||| ||||| | | | ||| |||| |
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| T |
8784626 |
aatcctagatataagagatttcaattttaaatttttcgcattaactccaaacatgactcgtcaagccaaggctgaaatgatcccatgtgacacacgttct |
8784527 |
T |
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| Q |
190 |
gcaaaaatggacagacaaaagtacatcaa |
218 |
Q |
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| T |
8784526 |
gcaaaaatcgacagacaaaagtacatcaa |
8784498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 9584154 - 9584309
Alignment:
| Q |
66 |
catattcaaaaaccattagttccaaatcatagatata--agagataccatttttatatttttc-gcaatatctctaaacatgattcgtcacgccaaggct |
162 |
Q |
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||||||||||||||||| ||||||||| |||||||| || ||| ||||||||| |||||| | ||||||||||| |||||||||||| ||||||||| |
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| T |
9584154 |
catattcaaaaaccattgcttccaaatcctagatatataagtgattccatttttacatttttttgtaatatctctaatcatgattcgtcaagccaaggct |
9584253 |
T |
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| Q |
163 |
gaaaccttcccaagaggctcactttctgcaaaaatggacagacaaaagtacatcaa |
218 |
Q |
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| || ||||||| ||| ||| || |||||||| ||||||| |||||| |||||| |
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| T |
9584254 |
gcaatgttcccaaatggcacacattatgcaaaaacggacagagaaaagtgcatcaa |
9584309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 8790702 - 8790571
Alignment:
| Q |
90 |
aatcatagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaaccttcccaagaggctcactttct |
189 |
Q |
| |
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|||| |||||||||||||| ||| ||||| | |||||||| || ||| ||||| || |||||| ||||||||||||| |||| | ||| ||| |||| |
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| T |
8790702 |
aatcctagatataagagattccaattttacagttttcgcattaactccaaacaagactcgtcaagccaaggctgaaatgaacccatgtggcacacattct |
8790603 |
T |
|
| Q |
190 |
gcaaaaatggacagacaaaagtacatcaaaat |
221 |
Q |
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| T |
8790602 |
gcaaaaatcggcagacaaaagtacatcaaaat |
8790571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 2539895 - 2540028
Alignment:
| Q |
85 |
ttccaaatcatagatataagagataccatttttatatttttcgcaatatctctaaacatgattcgtcacgccaaggctgaaaccttcccaagaggctcac |
184 |
Q |
| |
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||||||||| ||||||||| |||| ||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
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| T |
2539895 |
ttccaaatcctagatataaaagattccatttttacattttccgcaatatctccaaacatgtttcgtcacgccaaggctgaaatcttccagcgaggctcac |
2539994 |
T |
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| Q |
185 |
tttctgcaaaaatggacagacaaaagtacatcaa |
218 |
Q |
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| |||||| ||||||||||| |||| |||||||| |
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| T |
2539995 |
tctctgcacaaatggacagagaaaaatacatcaa |
2540028 |
T |
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