View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_low_17 (Length: 207)
Name: NF16033_low_17
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 13061177 - 13061005
Alignment:
| Q |
21 |
aatgaaaaaatgggttgctaggtttttcnnnnnnntaagtacaagaatgaagatttatcaagacaaaaaacctca-taaatatcgcatctatgtcaatcc |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
13061177 |
aatgaaaaaatgggttgctaggtttttcaaaaaaataagtacaagaatgaagatttatcaagacaaaaatcctcaataaatatcgcatctatgtcaatcc |
13061078 |
T |
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| Q |
120 |
cgagtcccgaccccaaaatttgcataaacctcactataaattcattaaatcctcaaccttttggtataaaatt |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13061077 |
cgagtcccgaccccaaaatttgcataaacctcactataaattcattaaattctcaaccttttggtataaaatt |
13061005 |
T |
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