View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_low_2 (Length: 582)
Name: NF16033_low_2
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_low_2 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 43147577 - 43147245
Alignment:
| Q |
4 |
tttttcttttcattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattt |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147577 |
ttttttttttcattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattt |
43147478 |
T |
|
| Q |
104 |
tacacactttaagagagaattttacatacttctttgtcctgcatacatgtaatactatttaaatatggtgtatcattcaacttgattcatataggatatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43147477 |
tacacactttaagagagaattttacatacttctttgtcctgcatacatgtaatactatttaaatatggtgtatcattcaacttgattcgtataggatatt |
43147378 |
T |
|
| Q |
204 |
ttgatgccgtttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147377 |
ttgatgccgtttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataa |
43147278 |
T |
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| Q |
304 |
gctgggccaaacactcccataatgcactcaact |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
43147277 |
gctgggccaaacactcccataatgcactcaact |
43147245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 477 - 573
Target Start/End: Complemental strand, 43147104 - 43147008
Alignment:
| Q |
477 |
aacacaaaaatttggtaacacagttcagagtaaagttgacttctatgtaattttatacgtcttttctatatttgttttataataacttcattcattt |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147104 |
aacacaaaaatttggtaacacagttcagagtaaagttgacttctatataattttatacgtcttttctatatttgttttataataacttcattcattt |
43147008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 26947030 - 26947086
Alignment:
| Q |
26 |
ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga |
82 |
Q |
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||||||||| |||||||||||||||||||| |||||| || ||| |||||||||||| |
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| T |
26947030 |
ttgatttactaatgacaagctctcccctttttataggctccaagggagagttctaga |
26947086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 165 - 336
Target Start/End: Complemental strand, 39362893 - 39362723
Alignment:
| Q |
165 |
aatatggtgtatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttg |
264 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || |
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| T |
39362893 |
aatatggtgcatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctactgtgctttcttcaaaaattgtatg |
39362794 |
T |
|
| Q |
265 |
acacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaaacactcccataatgcactcaact |
336 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39362793 |
gcacaacttctcttaaggactagaaaa-gtcagcaataagctgggccaaacactcccataatgcactcaact |
39362723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 511 - 569
Target Start/End: Complemental strand, 39362631 - 39362573
Alignment:
| Q |
511 |
gttgacttctatgtaattttatacgtcttttctatatttgttttataataacttcattc |
569 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
39362631 |
gttgacttctatttagttttacacgtcttttctatatttgtttcatgataacttcattc |
39362573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 12074303 - 12074251
Alignment:
| Q |
30 |
tttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga |
82 |
Q |
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|||||||||||||||||||||| ||| |||||| | |||||||||||||||| |
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| T |
12074303 |
tttacaaatgacaagctctcccatttttataggcttcaagagagagttctaga |
12074251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 4892216 - 4892272
Alignment:
| Q |
26 |
ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga |
82 |
Q |
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|
|||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
4892216 |
ttgatttacaaatgacaagctctcccctttttataggctctaagggagagttctaga |
4892272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 4872396 - 4872450
Alignment:
| Q |
26 |
ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttcta |
80 |
Q |
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|||||||||||||||||||||||||||||| |||||| || ||| |||||||||| |
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| T |
4872396 |
ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttcta |
4872450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 32238642 - 32238586
Alignment:
| Q |
26 |
ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga |
82 |
Q |
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|||||||||||||||||||||||||||||| |||||| || ||| |||||||||||| |
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| T |
32238642 |
ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttctaga |
32238586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 1205 - 1261
Alignment:
| Q |
26 |
ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga |
82 |
Q |
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||||||||||||||||| ||||||||| || |||||| || ||| |||| ||||||| |
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| T |
1205 |
ttgatttacaaatgacacgctctccccgttttataggctccaagggagatttctaga |
1261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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