View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16033_low_3 (Length: 568)
Name: NF16033_low_3
Description: NF16033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16033_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 248 - 553
Target Start/End: Original strand, 6286235 - 6286541
Alignment:
| Q |
248 |
tgaaagagaatgaaaaatgatattgttgtaacaaaaatgaaatattccataccaatatttgcttctccttgaatttatgtaacaaaatagggagtcatta |
347 |
Q |
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| T |
6286235 |
tgaaagagaatgaaaaattatattgttgtaacaaaaatgaaatattccataccaatatttgcttctccttgaatttatgtaacaaaatagggagtcatta |
6286334 |
T |
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| Q |
348 |
tt-gagtttgactataaggcaagcaatgatcatgactcgtaattaatgtcacaagagggtcaacagctagctaggtttgtcattgacattgctcactcct |
446 |
Q |
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| T |
6286335 |
tttgagtttgactataaggaaagcaatgatcatgactcgtaattaatgtcacaagggggtcaacagctagctaggtttgtcattgacattgctcactcct |
6286434 |
T |
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| Q |
447 |
tatatgaatgagtttactctttttcatccaagaggatatccatgaaacttaaaagcattttatgtgacctataggactctaatgagggcacaattagaaa |
546 |
Q |
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| T |
6286435 |
tatatgaatgagtttactctttttcatccaagaggatatccatgaaacttaaaagcattttatgtgacctataggactctaatgagggcacaattagaaa |
6286534 |
T |
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| Q |
547 |
tggtact |
553 |
Q |
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| T |
6286535 |
tggtact |
6286541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 6286118 - 6286237
Alignment:
| Q |
3 |
atttcatattgtttatatgttaaactatacggaaaatatttagtatatatccaaacacttcatagacatcttgaaagataaaaaataaagagtggtgtaa |
102 |
Q |
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| T |
6286118 |
atttcatattgtttatatgttaaactatacggaaaatatttagtatacatctaaacacttcatagacatcttgaaagacaaaaaataaagagtggtgtaa |
6286217 |
T |
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| Q |
103 |
tatatatgatagattggtga |
122 |
Q |
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||||| |||||||||||||| |
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| T |
6286218 |
tatatgtgatagattggtga |
6286237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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