View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16034_high_1 (Length: 746)

Name: NF16034_high_1
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16034_high_1
NF16034_high_1
[»] chr7 (16 HSPs)
chr7 (1-732)||(21410406-21411142)
chr7 (395-478)||(9183148-9183231)
chr7 (389-478)||(45709665-45709754)
chr7 (389-473)||(41519072-41519156)
chr7 (389-434)||(9871287-9871332)
chr7 (387-478)||(15137581-15137672)
chr7 (387-478)||(43663052-43663143)
chr7 (389-434)||(25242026-25242071)
chr7 (389-478)||(25590641-25590730)
chr7 (389-478)||(48771968-48772057)
chr7 (401-476)||(20335790-20335865)
chr7 (387-430)||(42262100-42262143)
chr7 (390-436)||(20952148-20952194)
chr7 (389-466)||(5934151-5934228)
chr7 (389-474)||(22035428-22035513)
chr7 (389-426)||(27776202-27776239)
[»] chr6 (10 HSPs)
chr6 (390-478)||(28363968-28364056)
chr6 (401-478)||(14199904-14199981)
chr6 (389-478)||(20213071-20213160)
chr6 (389-478)||(22107094-22107183)
chr6 (390-452)||(3925775-3925837)
chr6 (389-478)||(31622948-31623037)
chr6 (389-478)||(30127430-30127519)
chr6 (401-478)||(32050313-32050390)
chr6 (389-434)||(33549134-33549179)
chr6 (389-434)||(34786455-34786500)
[»] chr2 (13 HSPs)
chr2 (387-478)||(28846719-28846810)
chr2 (390-478)||(33582004-33582092)
chr2 (394-476)||(31573600-31573682)
chr2 (389-478)||(37480105-37480194)
chr2 (401-478)||(1435106-1435182)
chr2 (388-452)||(4438962-4439026)
chr2 (390-478)||(25637182-25637270)
chr2 (389-452)||(14500307-14500370)
chr2 (387-466)||(19244137-19244216)
chr2 (390-453)||(25931037-25931100)
chr2 (387-434)||(39715020-39715067)
chr2 (400-477)||(7599939-7600016)
chr2 (394-467)||(41202285-41202358)
[»] chr1 (23 HSPs)
chr1 (389-476)||(9879468-9879555)
chr1 (398-478)||(7219875-7219955)
chr1 (389-478)||(52336731-52336820)
chr1 (387-478)||(12587298-12587388)
chr1 (389-478)||(9643766-9643855)
chr1 (389-477)||(10526853-10526941)
chr1 (387-478)||(1094553-1094644)
chr1 (387-466)||(51814522-51814601)
chr1 (389-451)||(51703809-51703871)
chr1 (401-478)||(1600249-1600326)
chr1 (401-478)||(6122836-6122913)
chr1 (389-478)||(6650625-6650714)
chr1 (401-478)||(16893436-16893513)
chr1 (389-478)||(28283561-28283650)
chr1 (402-470)||(12662325-12662393)
chr1 (388-452)||(22049811-22049875)
chr1 (389-452)||(15786303-15786366)
chr1 (389-476)||(17745216-17745302)
chr1 (391-474)||(44126427-44126510)
chr1 (388-434)||(12259289-12259335)
chr1 (400-478)||(44961806-44961884)
chr1 (401-478)||(40257441-40257518)
chr1 (421-478)||(48619166-48619223)
[»] chr8 (21 HSPs)
chr8 (389-477)||(7140739-7140826)
chr8 (389-478)||(12281524-12281613)
chr8 (387-479)||(20994413-20994506)
chr8 (392-473)||(24675474-24675555)
chr8 (401-478)||(43968955-43969032)
chr8 (390-478)||(3305145-3305233)
chr8 (387-478)||(31088701-31088792)
chr8 (401-478)||(11819818-11819895)
chr8 (389-478)||(31087215-31087304)
chr8 (390-478)||(4830518-4830606)
chr8 (387-466)||(23361618-23361697)
chr8 (389-434)||(968392-968437)
chr8 (389-434)||(16852370-16852415)
chr8 (389-434)||(19703488-19703533)
chr8 (401-478)||(27750772-27750849)
chr8 (409-478)||(27979207-27979276)
chr8 (409-478)||(28036476-28036545)
chr8 (389-478)||(28898447-28898535)
chr8 (397-478)||(35672482-35672563)
chr8 (401-478)||(35826353-35826430)
chr8 (401-478)||(44780071-44780148)
[»] chr4 (17 HSPs)
chr4 (387-478)||(21660101-21660192)
chr4 (387-478)||(21668865-21668956)
chr4 (387-478)||(28635724-28635815)
chr4 (390-478)||(53496908-53496996)
chr4 (387-478)||(51954142-51954233)
chr4 (401-478)||(7949411-7949488)
chr4 (389-473)||(11592115-11592199)
chr4 (387-434)||(47044745-47044792)
chr4 (389-434)||(39509100-39509145)
chr4 (387-436)||(42644909-42644958)
chr4 (401-478)||(49576851-49576928)
chr4 (350-452)||(31759641-31759735)
chr4 (389-443)||(1730481-1730535)
chr4 (401-478)||(8030161-8030238)
chr4 (389-434)||(38869798-38869843)
chr4 (397-466)||(46545749-46545818)
chr4 (401-478)||(47230558-47230634)
[»] scaffold1367 (1 HSPs)
scaffold1367 (389-478)||(797-886)
[»] chr3 (23 HSPs)
chr3 (389-478)||(2667892-2667981)
chr3 (389-478)||(51903835-51903924)
chr3 (389-475)||(44743815-44743901)
chr3 (389-478)||(10445096-10445185)
chr3 (389-434)||(21960581-21960626)
chr3 (387-478)||(17035016-17035105)
chr3 (387-474)||(4844472-4844559)
chr3 (387-474)||(4870168-4870255)
chr3 (389-451)||(4222171-4222233)
chr3 (392-478)||(52769940-52770026)
chr3 (401-478)||(8170714-8170791)
chr3 (389-478)||(10499066-10499155)
chr3 (389-478)||(28531015-28531104)
chr3 (389-433)||(9557350-9557394)
chr3 (387-478)||(13808842-13808933)
chr3 (389-452)||(15048044-15048107)
chr3 (397-436)||(48583449-48583488)
chr3 (389-479)||(31520561-31520651)
chr3 (389-471)||(31788935-31789016)
chr3 (401-478)||(8075084-8075161)
chr3 (389-434)||(30311336-30311381)
chr3 (389-434)||(31608525-31608570)
chr3 (401-478)||(49397498-49397575)
[»] chr5 (13 HSPs)
chr5 (387-478)||(1410618-1410707)
chr5 (387-478)||(16773835-16773926)
chr5 (387-478)||(19949573-19949663)
chr5 (389-434)||(22020863-22020908)
chr5 (401-478)||(29173532-29173609)
chr5 (387-434)||(14495806-14495853)
chr5 (389-434)||(27596357-27596402)
chr5 (389-478)||(29075811-29075900)
chr5 (401-478)||(29210400-29210477)
chr5 (389-434)||(41165630-41165675)
chr5 (393-473)||(21086748-21086828)
chr5 (394-478)||(43442231-43442315)
chr5 (402-472)||(1279034-1279104)
[»] scaffold0118 (1 HSPs)
scaffold0118 (389-478)||(41590-41679)
[»] scaffold0299 (1 HSPs)
scaffold0299 (389-453)||(11558-11622)
[»] scaffold0211 (1 HSPs)
scaffold0211 (401-474)||(24095-24168)
[»] scaffold0258 (1 HSPs)
scaffold0258 (389-477)||(15281-15369)
[»] scaffold0122 (1 HSPs)
scaffold0122 (401-478)||(6879-6953)
[»] scaffold0008 (1 HSPs)
scaffold0008 (389-478)||(49336-49425)


Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 732
Target Start/End: Complemental strand, 21411142 - 21410406
Alignment:
Q  1 agtttagtcattcatcttgttctacatggttcgtcacatcaaccttccatcctcagaatttatttattttt--aagnnnnnnntatcatgaaataagtta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||       |||||||||||||||||    
T  21411142 agtttagtcattcatcttgttctacatggttcgtcacatcaaccttccatcctcaga-tttatttatttttttaagaaaaaaatatcatgaaataagtta 21411044  T
Q  99 aaaagacaggaaataatttcatgcgacaactgttacagtttctcgatcgtttgtccattgaaatttagcccccataacgggataggatgtctccatggaa 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21411043 aaaagacaggaaataatttcatgcgacag-tgttacagtttctcgatcgtttgtccattgaaatttagcccccataacgggataggatgtctccatggaa 21410945  T
Q  199 accaacaacattaaattgccacattgagaaaaggaacttaccacacaatgtgtgtgaaaattgtagggaaataaggggtgtcaaaccggctgtcttgcca 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21410944 accaacaacattaaaatgccacattgagaaaaggaacttaccacacaatgtgtgtgaaaattgtagggaaataaggggtgtcaaaccggctgtcttgcca 21410845  T
Q  299 ctatttaagttgtgtatattaaagtacaacatcgtcaacattctttgtttgtaacccacttgggttaatctggtggtattagacttaggactt-gggatc 397  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| ||||||||| |||||| || || ||||||    
T  21410844 ctatttaagt--tgtatattaaagtaccacatcgtcaacattcttcgtttgtaatccacttggtttgatcaggtggtatt-gacttaagatttggggatc 21410748  T
Q  398 tgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaac----------nnnnnnnn 487  Q
    |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||| |||| |||||||                      
T  21410747 tgagagtgtgctcctcctcgaagtctcaaattcgattatgtctgatgtcaatttggatagactaatttagcttcgtcaaaacaaaaaaacaaaacaaaaa 21410648  T
Q  488 tctccggttgttggatgtacagtatatgtggaattgagtccaaaatttacactaggcatgaggaggttgaatattgaatttgtattgaagtctcactttg 587  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  21410647 tctctggttgttggatgtacaatatatgtggaattgagtccaaaatttacactaggcat---gaggttgaatattgaatttgtattgaagtctcactttg 21410551  T
Q  588 ttaaaattttcaaatggttgaatgtacatatgacttttaggtaccatcatcctttgagatggtttttgagagtgagatttaaattcatttaaaatgttat 687  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  21410550 ttaaaattttcaagtggttgaatgtacatatgacttttaggtaccatcatcctttgagatggcttttgagagtgagattcaaattcatttaaaatgttat 21410451  T
Q  688 tataatcgaattaaggatgacaatatggaaataagacacaggttc 732  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  21410450 tatagtcgaattaaggatgacaatatggaaataagacacaggttc 21410406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 395 - 478
Target Start/End: Complemental strand, 9183231 - 9183148
Alignment:
Q  395 atctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||| |||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||| | ||||||||  ||||||||||    
T  9183231 atctgggagtgtgctcctcctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaatttagtttcttcaaaa 9183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 45709754 - 45709665
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||| || | || |||||| ||| | |||| ||| |||||| ||||    
T  45709754 cttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattatctccgataccaatttaggtgggctaacttagcttctttaaaa 45709665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 41519156 - 41519072
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttctt 473  Q
    |||||||| | ||||||||||||| ||| | ||||||||||||||||| || ||| ||||||||||| | |||||||| ||||||    
T  41519156 cttgggatttaagagtgtgctccttctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaatttagcttctt 41519072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 9871332 - 9871287
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||| || ||||||||||||||||||||||||||||||||||    
T  9871332 cttgggatttgggagtgtgctcctcctcgaagtctcagattcgatt 9871287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 15137581 - 15137672
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||| |  |||||||||||||||| | ||||||| || |||| | |||||| ||||||||||| | ||||||||  ||||||||||    
T  15137581 gacttgggatttaggagtgtgctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaatttagtttcttcaaaa 15137672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 43663143 - 43663052
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| ||  ||| ||| ||||||||||  |||||| ||||| | | || ||||||||||||||| |||||||||| |||||||||||    
T  43663143 gacttgggacctaggagcgtggtcctcctcgagatctcaggttcgaatctctccggtatcaatttgggtggactaatttagcttcttcaaaa 43663052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 25242026 - 25242071
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||    
T  25242026 cttgagatctgagagtatgctcctcctcgaggtctcagattcgatt 25242071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 25590641 - 25590730
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||| |||||| |||||||||||||||||| ||||| | ||||||| | |  ||| |||||||| || | |||||||| |||||||||||    
T  25590641 cttgagatctgggagtgtgctcctcctcgaggtctcgggttcgattttcttcggtgtcaatttgagtgggctaatttagcttcttcaaaa 25590730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 48771968 - 48772057
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| ||||||||||||||| || ||||||| |||||||||  |  ||| |||||| ||| | |||||||| |||||| ||||    
T  48771968 cttgggatctgggagtgtgctcctccttgaggtctcaggttcgattatcccaagtaccaatttaggtgggctaatttagcttcttaaaaa 48772057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 20335865 - 20335790
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaa 476  Q
    |||||||||||||||||| ||||||| ||||||| |  | | | ||||||||| | | ||||||||||||||||||    
T  20335865 gagtgtgctcctcctcgaggtctcaggttcgattctcaccgatgtcaatttggatgggctaatttaacttcttcaa 20335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 42262143 - 42262100
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattc 430  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  42262143 gacttgggatctgagagtgtgctcctcctaaaggtctcagattc 42262100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 20952194 - 20952148
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    |||||| ||| |||||||||||||||| || ||||||||||||||||    
T  20952194 ttgggacctgggagtgtgctcctcctcaaaatctcagattcgattat 20952148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 5934151 - 5934228
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaattta 466  Q
    ||||||||||| ||||||||||||||| || || |||  |||||||   |||||| ||||||| ||| ||||||||||    
T  5934151 cttgggatctgggagtgtgctcctccttgaggtttcatgttcgattccctctggtgtcaatttaggtggactaattta 5934228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 474
Target Start/End: Original strand, 22035428 - 22035513
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttc 474  Q
    ||||||| |||||||||||||||||||||| | | ||| ||||||| | ||  || |||||||  || |||||||||| |||||||    
T  22035428 cttgggacctgagagtgtgctcctcctcgaggacccaggttcgattctctcctgtgtcaatttaagtggactaatttagcttcttc 22035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 27776202 - 27776239
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcag 426  Q
    |||||||  |||||||||||||||||||||||||||||    
T  27776202 cttgggacttgagagtgtgctcctcctcgaagtctcag 27776239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 28363968 - 28364056
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||| |||||| ||||||||| | | ||||||||| ||||||||||    
T  28363968 ttgggatctgcgagtgtgctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaa 28364056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 14199981 - 14199904
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | |||||||||||||||   ||| || ||||||||||| |||||||||| |||||| ||||    
T  14199981 gagtgtgctcctcctcaaggtctcagattcgattccttctagtgtcaatttgggtggactaatttagcttcttaaaaa 14199904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 20213071 - 20213160
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| ||| |||||||||||||||| | ||||||| |||||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  20213071 cttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaa 20213160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 22107094 - 22107183
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| ||| |||||||||||||||| | ||||||| |||||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  22107094 cttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaa 22107183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 390 - 452
Target Start/End: Original strand, 3925775 - 3925837
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttg 452  Q
    |||| ||||||||||||| |||| ||| ||||||||||||| ||| | |||||||||||||||    
T  3925775 ttggaatctgagagtgtgttccttctcaaagtctcagattcaattctctctggtatcaatttg 3925837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 31623037 - 31622948
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| ||| |||||||||||||||||| ||||||| || || |   || ||| ||||||||||| | |||||||| |||||||||||    
T  31623037 cttgggacctgggagtgtgctcctcctcgaggtctcaggtttgaatcactccggtgtcaatttgggtgggctaatttagcttcttcaaaa 31622948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 30127430 - 30127519
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| |||| ||||||||||||| |||| ||||||| ||||||| | || |||  |||||| |||||  ||||||| |||| ||||||    
T  30127430 cttggggtctgggagtgtgctcctcttcgaggtctcaggttcgattctttccggtgccaatttaggtaggttaatttagcttcctcaaaa 30127519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 32050390 - 32050313
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| |||||||| | ||||||||| ||||| | || | | ||||||||||||| ||||||||| ||||| ||||    
T  32050390 gagtgtgatcctcctcaaggtctcagatccgattctttccgatgtcaatttgggtaggctaatttaatttcttaaaaa 32050313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 33549134 - 33549179
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  33549134 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 33549179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 34786500 - 34786455
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||    
T  34786500 cttgggatctgggagtgtgctccttctcgaagtctcaagttcgatt 34786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 28846719 - 28846810
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||||  | | | ||||||||||||||||||||||||||||| ||||    
T  28846719 gacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgattatcaccgatgtcaatttgggtagactaatttaacttcttaaaaa 28846810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 33582004 - 33582092
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| ||||||||||||||||||| || ||||||| ||||||| | |||  | ||||||| ||| |||||||||| |||||||||||    
T  33582004 ttgggacctgagagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttaggtggactaatttagcttcttcaaaa 33582092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 476
Target Start/End: Complemental strand, 31573682 - 31573600
Alignment:
Q  394 gatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaa 476  Q
    |||||||||||||||||||||| || ||||||| ||||||| | |  | | ||||||| ||| ||||||||||||||||||||    
T  31573682 gatctgagagtgtgctcctccttgatgtctcaggttcgattctcttcgatgtcaatttaggtggactaatttaacttcttcaa 31573600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 37480105 - 37480194
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| |||||||||||||||||||| | ||||||| ||||||| |  | |||  |||||||||| | |||||||| |||||||||||    
T  37480105 cttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttcttcaaaa 37480194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 1435106 - 1435182
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| |||||| | ||||||| ||||||| | |||||| ||||||||||| | |||||||| |||||||||||    
T  1435106 gagtgtgcttctcctcaaggtctcag-ttcgattctctctggtgtcaatttgggtgggctaatttagcttcttcaaaa 1435182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 4439026 - 4438962
Alignment:
Q  388 acttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttg 452  Q
    ||||||||||||||||||||||||||||| | ||| ||  ||||||| | ||||||| |||||||    
T  4439026 acttgggatctgagagtgtgctcctcctcaaggtcgcatgttcgattctttctggtaccaatttg 4438962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 25637182 - 25637270
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||| |||||||||||| ||||| ||||||| |||| || | || | |  |||||| ||| | ||||||||||||||||||||    
T  25637182 ttgggatctgggagtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatttaggtgggctaatttaacttcttcaaaa 25637270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 14500307 - 14500370
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttg 452  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||| | ||||||  |||||||    
T  14500307 cttgagatctgggagtgtgctcctcctctaggtctcagattcgattctctctggtgccaatttg 14500370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 19244137 - 19244216
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaattta 466  Q
    ||||||||| |||||||||||||||||| | | ||||||| ||||||| | ||||||  ||||||| || | ||||||||    
T  19244137 gacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtgggctaattta 19244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 25931037 - 25931100
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgg 453  Q
    |||||| ||||||||||| |  ||||||||||||||||||||||| | | |||| |||||||||    
T  25931037 ttgggacctgagagtgtgtttatcctcgaagtctcagattcgattctctttggtgtcaatttgg 25931100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 39715020 - 39715067
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  39715020 gacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 39715067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 7600016 - 7599939
Alignment:
Q  400 agagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaa 477  Q
    ||||||||||||||||||| || |||  ||||||| | |  ||||| |||||| ||||||||||||| ||| ||||||    
T  7600016 agagtgtgctcctcctcgaggtttcatgttcgattctcttcggtataaatttgtgtagactaatttagcttattcaaa 7599939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 467
Target Start/End: Original strand, 41202285 - 41202358
Alignment:
Q  394 gatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaa 467  Q
    |||||| |||| |||||||||||||||||| || ||| ||| | |||| | ||||||||| | |||||||||||    
T  41202285 gatctgggagtatgctcctcctcgaagtcttaggttcaattttctctgatgtcaatttggatggactaatttaa 41202358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 389 - 476
Target Start/End: Original strand, 9879468 - 9879555
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaa 476  Q
    |||||||||||||||||| ||| |||| || ||||||||||||||||| |||  | ||||||||||| | ||||||||||||||||||    
T  9879468 cttgggatctgagagtgtactcttccttgaggtctcagattcgattatctcttatgtcaatttgggtgggctaatttaacttcttcaa 9879555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 478
Target Start/End: Complemental strand, 7219955 - 7219875
Alignment:
Q  398 tgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||||||||||||||||||||| ||||||| | | || || |||||| ||| |||||||||| |||||||||||    
T  7219955 tgagagtgtgctcctcctcgaagtctcaggttcgattctctttgataccaatttaggtggactaatttagcttcttcaaaa 7219875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 52336820 - 52336731
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| |||||||||||||||  |  |||||| ||||||||| |||||| ||||||||| | | ||||||||| ||||||||||    
T  52336820 cttgggatctgggagtgtgctcctccttaagatctcaggttcgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaa 52336731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 12587298 - 12587388
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||||| | || |||  |||||| ||| | |||||||| |||||||||||    
T  12587298 gacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctccggt-gcaatttaggtgggctaatttagcttcttcaaaa 12587388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 9643855 - 9643766
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| ||||||| || ||||| | ||||||||||| ||||| || ||| |||||||  ||||  |||||||||||||||||||    
T  9643855 cttgggatctgggagtgtgttcatcctcaaggtctcagattcaattatctccggtgtcaatttttgtaggttaatttaacttcttcaaaa 9643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 10526853 - 10526941
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaa 477  Q
    ||||||| ||| |||| ||||||||||| | ||||||||||||||| | |||||  ||||||||||| |  ||||||| ||||||||||    
T  10526853 cttgggacctgggagtttgctcctcctcaaggtctcagattcgattctctctggagtcaatttgggtgggttaatttagcttcttcaaa 10526941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 1094553 - 1094644
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| | ||| |||||||||||||| ||| |||||| |||||||| | || |||  |||||| ||| | ||||||||||||||||||||    
T  1094553 gacttggaacctgtgagtgtgctcctccacgaggtctcaaattcgattctctccggtgccaatttaggtgggctaatttaacttcttcaaaa 1094644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 466
Target Start/End: Original strand, 51814522 - 51814601
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaattta 466  Q
    |||||| ||||||||||||||||||||||| | ||||||| ||||||| | || |||  |||||||||| | ||||||||    
T  51814522 gacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaattta 51814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 451
Target Start/End: Original strand, 51703809 - 51703871
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaattt 451  Q
    ||||| ||||| |||||||||||||||| |||| |||| ||||||| | ||||||||||||||    
T  51703809 cttggaatctgggagtgtgctcctcctcaaagtttcaggttcgattctctctggtatcaattt 51703871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 1600326 - 1600249
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||  |||| |||| ||||||| | |||||| ||||||||| | |||||| ||| |||||||||||    
T  1600326 gagtgtgctcctccttaaagtttcaggttcgattctctctggtgtcaatttggatggactaacttagcttcttcaaaa 1600249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 6122836 - 6122913
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||| |||||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  6122836 gagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaa 6122913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 6650625 - 6650714
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| | |||| ||||||||||| | ||||||| ||||||| | |||||| ||||||| ||| || || |||| |||||||||||    
T  6650625 cttgggatcggggagtatgctcctcctcaatgtctcaggttcgattctctctggtgtcaatttaggtggattagtttagcttcttcaaaa 6650714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 16893436 - 16893513
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| ||||||||||| ||||||| ||||||| | || ||| |||||||| || | |||||||| |||||||||||    
T  16893436 gagtgtactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaatttagcttcttcaaaa 16893513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 28283561 - 28283650
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||| ||| |||||||||| || |||| || ||||||| ||||||| | |||||| |||||||  |||| ||||||||||||||| ||||    
T  28283561 cttgagatttgagagtgtgttcttccttgatgtctcaggttcgattctctctggtgtcaatttatgtagtctaatttaacttcttaaaaa 28283650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 470
Target Start/End: Original strand, 12662325 - 12662393
Alignment:
Q  402 agtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaactt 470  Q
    ||||||||||||||||| ||||||| ||||||||| |||  |  |||||| ||| ||||||||||||||    
T  12662325 agtgtgctcctcctcgatgtctcaggttcgattatctctaatgccaatttaggtggactaatttaactt 12662393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 22049875 - 22049811
Alignment:
Q  388 acttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttg 452  Q
    |||||||||||||||||||||| |||||| | || | |||||||||| | |||||| ||||||||    
T  22049875 acttgggatctgagagtgtgcttctcctcaaggtttgagattcgattctctctggtgtcaatttg 22049811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Complemental strand, 15786366 - 15786303
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttg 452  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||| | | |||| ||||||||    
T  15786366 cttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctctttggtgtcaatttg 15786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 476
Target Start/End: Complemental strand, 17745302 - 17745216
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaa 476  Q
    ||||||| ||||| |||||||||||||||| ||||||  ||||||| | |||||| ||||||| ||| |  ||||||| |||||||||    
T  17745302 cttgggacctgagcgtgtgctcctcctcgaggtctcatgttcgattctctctggtgtcaatttaggt-ggttaatttagcttcttcaa 17745216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 474
Target Start/End: Original strand, 44126427 - 44126510
Alignment:
Q  391 tgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttc 474  Q
    ||||| ||| |||||||||||||| ||| |||||||||| |||| | ||| ||  |||||| ||||| |||||||| |||||||    
T  44126427 tgggacctgggagtgtgctcctccacgaggtctcagatttgattctctctagtgccaatttaggtaggctaatttagcttcttc 44126510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 12259289 - 12259335
Alignment:
Q  388 acttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||| || |||||||||||||||||||||||||  |||||||    
T  12259289 acttgggatttgggagtgtgctcctcctcgaagtctcaagttcgatt 12259335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 400 - 478
Target Start/End: Original strand, 44961806 - 44961884
Alignment:
Q  400 agagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||   ||||||| ||||||| | ||| || ||||||||||| | |||||||| |||||| ||||    
T  44961806 agagtgtgctcctcctcagggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttcttaaaaa 44961884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 40257441 - 40257518
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||| ||||||  ||| ||| | || ||| ||||||||||| | ||| |||| |||||||||||    
T  40257441 gagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagtttagcttcttcaaaa 40257518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 48619223 - 48619166
Alignment:
Q  421 tctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| ||| ||||| || ||| |||||||| || ||||||||||||||||||||||    
T  48619223 tctcaggttctattatctccggtgtcaatttgagtggactaatttaacttcttcaaaa 48619166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 7140739 - 7140826
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaa 477  Q
    ||||||||||| | ||||||||||||||||  |||||||||||||| | || ||||||||||||||| | |||||||| ||||||||||    
T  7140739 cttgggatctgggtgtgtgctcctcctcgagctctcagattcgattctctc-ggtatcaatttgggtgggctaatttaccttcttcaaa 7140826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 12281524 - 12281613
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||| | || | | |||||||  |  |||||||||| |||||||||||    
T  12281524 cttgggacctgagagtgtgcccctcctcgaggtctcagattcgattttctccgatgtcaatttaagctgactaatttagcttcttcaaaa 12281613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 20994506 - 20994413
Alignment:
Q  387 gacttgggatctgagagtgtgctcct-cctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaac 479  Q
    ||||||||| ||| |||||||||||| |||| |||||||||  |||||||| ||||||| |||||||| | | |||||||| |||||| |||||    
T  20994506 gacttgggacctgggagtgtgctcctccctcaaagtctcaggatcgattatctctggtaccaatttggatgggctaatttagcttcttaaaaac 20994413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 473
Target Start/End: Complemental strand, 24675555 - 24675474
Alignment:
Q  392 gggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttctt 473  Q
    ||||||||||||||||||||| ||| | ||||||||||||||| | |||| | | ||||||| |  ||||||||||||||||    
T  24675555 gggatctgagagtgtgctccttctcaaggtctcagattcgattttctctgatgttaatttggatgaactaatttaacttctt 24675474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 43969032 - 43968955
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||||||  || ||||||||||||||||| |||||| | ||||| ||| |||||||||| |||||| ||||    
T  43969032 gagtgtgctcctccctgaggtctcagattcgattatctctggtgttaatttaggtggactaatttatcttcttaaaaa 43968955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 3305233 - 3305145
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||| ||| |||||||||||| | |||||| |||||||||| ||||||  |||||| ||| | |||||||| ||||| |||||    
T  3305233 ttgggatctgggagcgtgctcctcctcaaggtctcaaattcgattatctctggtgccaatttaggtgggctaatttatcttctgcaaaa 3305145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 31088701 - 31088792
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| ||| ||||||| |  ||||||| ||||||| || |||| | |||| || |||||| ||||| ||||||||||||||||||||    
T  31088701 gacttgggacctgcgagtgtgattatcctcgaggtctcaggtttgattctctctgataccaatttaggtaggctaatttaacttcttcaaaa 31088792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 11819818 - 11819895
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||| |||||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  11819818 gagtgtgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagcttcttcaaaa 11819895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 31087304 - 31087215
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| |||| | | ||||||||| ||||||| ||||||||| || ||| |||||||   ||| ||||||||||||||| ||||    
T  31087304 cttgggatctgggagtatccccctcctcgaggtctcaggttcgattatctccggtgtcaatttaaataggctaatttaacttcttaaaaa 31087215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 4830518 - 4830606
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||| |||||||||| ||||||| ||| | | | |  ||| ||||||||| | || ||||||| |||||||||||    
T  4830518 ttgggatctgagagtgtgttcctcctcgaggtctcaggttcaaatttatacggtgtcaatttggatggattaatttagcttcttcaaaa 4830606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 23361697 - 23361618
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaattta 466  Q
    |||||||||| || |||||||||||||||| | ||||||| ||| ||| | |||||| ||||||| ||| | ||||||||    
T  23361697 gacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaattta 23361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 968392 - 968437
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  968392 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 16852370 - 16852415
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  16852370 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 16852415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 19703533 - 19703488
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| |||||||||||||||||||| | ||||||| |||||||    
T  19703533 cttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 19703488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 27750772 - 27750849
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||| |||||||   ||| || ||||||||| | |||||||||| |||||| ||||    
T  27750772 gagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatggactaatttagcttcttaaaaa 27750849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 478
Target Start/End: Original strand, 27979207 - 27979276
Alignment:
Q  409 tcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||| |||||| |  ||||||||| ||| || ||||||||| | | ||||||||||||||||||||    
T  27979207 tcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaatttaacttcttcaaaa 27979276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 478
Target Start/End: Original strand, 28036476 - 28036545
Alignment:
Q  409 tcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||| |||||| |  ||||||||| ||| || ||||||||| | | ||||||||||||||||||||    
T  28036476 tcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaatttaacttcttcaaaa 28036545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 28898535 - 28898447
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||| |||||||||||||| ||||||| |  | |||| ||||||| | |||| | ||||||||| | ||||||||||||||||| ||||    
T  28898535 cttggaatctgagagtgtgcccctcctcaatatttcaggttcgattttttctg-tgtcaatttggatggactaatttaacttcttaaaaa 28898447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 478
Target Start/End: Complemental strand, 35672563 - 35672482
Alignment:
Q  397 ctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||| |||||||||| |||||  ||| || |||| | || ||| ||||||||| | |||||||||| |||||||||||    
T  35672563 ctgagagtatgctcctccttgaagttgcaggtttgattctctccggtgtcaatttggatggactaatttagcttcttcaaaa 35672482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 35826353 - 35826430
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||  |||| || ||||||||| |  | ||| ||||||| ||| ||||||||||||||||| ||||    
T  35826353 gagtgtgctcctccttaaagtttcggattcgattctcaccggtgtcaatttaggtggactaatttaacttcttaaaaa 35826430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 44780148 - 44780071
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||| || ||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  44780148 gagtgtgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaa 44780071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 21660192 - 21660101
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| |||||| |||||||||| ||||||| ||||||  ||||||||| ||| || ||||||| |||||||||||||| |||||| ||||    
T  21660192 gacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtagactaatttagcttcttaaaaa 21660101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 21668956 - 21668865
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| |||||| |||||||||| ||||||| ||||||  ||||||||| ||| || ||||||| |||||||||||||| |||||| ||||    
T  21668956 gacttgagatctgggagtgtgctcttcctcgaggtctcaagttcgattatctctagtgtcaatttaggtagactaatttagcttcttaaaaa 21668865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 28635724 - 28635815
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||||| ||||||||||||||| || |||| || ||||||| | ||||||  |||||||||| | |||||||| |||||||||||    
T  28635724 gacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatttgggtgggctaatttagcttcttcaaaa 28635815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 53496908 - 53496996
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| ||| |||||||||||||||| |||||||||||| |||| | |||||   |||||||| | ||||||||||||||||| ||||    
T  53496908 ttgggacctgggagtgtgctcctcctcaaagtctcagatttgattctctctggagccaatttggttggactaatttaacttcttaaaaa 53496996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 51954142 - 51954233
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||  || |||| ||||||||||||| ||||||| || |||||| || ||| ||||||||||| | |||||||| |||||||||||    
T  51954142 gacttgggacttgggagtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagcttcttcaaaa 51954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 7949488 - 7949411
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||| ||||||| | |||||| ||||||| ||| | |||||||| |||||||||||    
T  7949488 gagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttcaaaa 7949411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 473
Target Start/End: Complemental strand, 11592199 - 11592115
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttctt 473  Q
    ||||||| |||||||||||||||||||| | |||| || ||||||||| ||||| | ||||||| || |  ||||||||||||||    
T  11592199 cttgggacctgagagtgtgctcctcctccaggtcttaggttcgattatctctggaaccaatttgagttggttaatttaacttctt 11592115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 47044745 - 47044792
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  47044745 gacttgggatctgagagtttgctcctcctcgaggtctcaggttcgatt 47044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 39509100 - 39509145
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||    
T  39509100 cttgggatctgggagtgtgctcctcctcgaggtctcaggttcgatt 39509145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 42644958 - 42644909
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||||||||||||||| || ||||| ||||||||| |||||||||    
T  42644958 gacttgggatctgagagtgtgttcttcctcaaagtctcaggttcgattat 42644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 49576928 - 49576851
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||| ||||||| | ||   | ||||||||||| |||||| |||||||||||||||    
T  49576928 gagtgtgctcctcctcaaggtctcaggttcgattctctccaatgtcaatttgggtggactaacttaacttcttcaaaa 49576851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 452
Target Start/End: Complemental strand, 31759735 - 31759641
Alignment:
Q  350 taacccacttgggttaatctggtggtattagacttaggacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaat 449  Q
    ||||||||||||||| |||| |||||||| | ||| ||||||||||       |||||||||||||| | ||||||||||||||| | ||||||| ||||    
T  31759735 taacccacttgggttgatctagtggtattgg-cttgggacttggga-------gtgtgctcctcctcaaggtctcagattcgattctttctggtaccaat 31759644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 1730535 - 1730481
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||| ||||||||||||||||| || ||||||||||||| ||| | ||||||    
T  1730535 cttgggacctgagagtgtgctcctcttcaaagtctcagattctattctctctggt 1730481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 8030238 - 8030161
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | ||||||  |||||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  8030238 gagtgtgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaa 8030161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 38869798 - 38869843
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||    
T  38869798 cttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 38869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 466
Target Start/End: Original strand, 46545749 - 46545818
Alignment:
Q  397 ctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaattta 466  Q
    |||||||||||||||||||| |  |||||||||||||| | |||| | ||||||| | | ||||||||||    
T  46545749 ctgagagtgtgctcctcctcaagatctcagattcgattttctctgatgtcaatttagatggactaattta 46545818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 47230558 - 47230634
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||||| ||||||||||| |||| ||| | ||| ||| |||||| ||| | |||||||| |||||||||||    
T  47230558 gagtgtgctcctcatcgaagtctcaaattcaattct-tctagtaccaatttaggtgggctaatttatcttcttcaaaa 47230634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 886 - 797
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||| | ||| |||| ||||||||| ||  |||||| ||| |||||||    
T  886 cttgggatctgggaatgtgctcctcctcgaagtctcaggttcgattctctctagtattaatttgggtggataaatttagcttattcaaaa 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 2667892 - 2667981
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| |||||||||| ||||||| ||||||| ||||||||| ||| || ||||||| ||| | ||| |||| |||||||||||    
T  2667892 cttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtttagcttcttcaaaa 2667981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 51903924 - 51903835
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| |||||||||||||||||  ||||||| ||||||| | || ||| |||||||| || | |||||||| |||||||||||    
T  51903924 cttgggatctgggagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttcttcaaaa 51903835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 475
Target Start/End: Complemental strand, 44743901 - 44743815
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttca 475  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||| ||  ||  |||||||||| |  ||||||| ||||||||    
T  44743901 cttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttcttca 44743815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 10445185 - 10445096
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||| ||| |||||||||||||||||| ||||||| ||||||| | ||||||   |||||| || | |||||||| |||||||||||    
T  10445185 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttcttcaaaa 10445096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 21960581 - 21960626
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||    
T  21960581 cttgggacctgagagtgtgctcctcctcgaggtctcagattcgatt 21960626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 17035016 - 17035105
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||||  ||| ||||| | ||||||| ||||||| |    ||||||||||||||| ||||||||||||||||| ||||    
T  17035016 gacttgggatctgagagtg--ctcatcctcaaggtctcaggttcgattctcctcggtatcaatttgggtggactaatttaacttcttaaaaa 17035105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 4844559 - 4844472
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttc 474  Q
    ||||||||||||| |||||||||||||||||| |||||||  |||||| | || |||  ||||||| || | |||||||| |||||||    
T  4844559 gacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttcttc 4844472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 4870255 - 4870168
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttc 474  Q
    ||||||||||||| |||||||||||||||||| |||||||  |||||| | || |||  ||||||| || | |||||||| |||||||    
T  4870255 gacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttcttc 4870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 451
Target Start/End: Original strand, 4222171 - 4222233
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaattt 451  Q
    ||||||||||| |||||||||||||||| |||||| || ||||||| | |||||| |||||||    
T  4222171 cttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaattt 4222233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 478
Target Start/End: Complemental strand, 52770026 - 52769940
Alignment:
Q  392 gggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||| ||||||||||||||| || ||||||| ||||||| | | | || ||||||| ||| | |||||||| |||||||||||    
T  52770026 gggatctgggagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttcttcaaaa 52769940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 8170714 - 8170791
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||| ||| | ||||||| |||||||   |||||| ||||||||||| | ||||||||| ||||||||||    
T  8170714 gagtgtgctcctactcaaggtctcaggttcgatttcctctggtgtcaatttgggtgggctaatttaaattcttcaaaa 8170791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 10499155 - 10499066
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| |||| ||||| |||| || ||||||| ||||||| | || | | ||||||||||| | |||||||| |||||||||||    
T  10499155 cttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggtgggctaatttagcttcttcaaaa 10499066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 28531104 - 28531015
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| |||| ||||||||||||| |||| ||  || ||| | |||||| ||||||||||| | |||||||| ||| |||||||    
T  28531104 cttgggatctgggagtatgctcctcctcgaggtcttaggctcaattctctctggtgtcaatttgggtgggctaatttagcttattcaaaa 28531015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 9557350 - 9557394
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgat 433  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||    
T  9557350 cttgggatctgagagtgtgctcctcctcgagatctcaggttcgat 9557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 13808933 - 13808842
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||  ||||||||||||||| | ||||||| ||| ||| | |||  | ||||||||| | || ||||||| |||||||||||    
T  13808933 gacttgggatctggcagtgtgctcctcctctaggtctcaggttcaattctctctaatgtcaatttggatggattaatttagcttcttcaaaa 13808842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Complemental strand, 15048107 - 15048044
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttg 452  Q
    ||||||||||| || ||||||||||||| | ||||||| ||||||||| ||||||  |||||||    
T  15048107 cttgggatctgggaatgtgctcctcctcaaggtctcaggttcgattatctctggtgccaatttg 15048044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 436
Target Start/End: Complemental strand, 48583488 - 48583449
Alignment:
Q  397 ctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  48583488 ctgagagtgtcctcctcctcaaagtctcagattcgattat 48583449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 389 - 479
Target Start/End: Complemental strand, 31520651 - 31520561
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaac 479  Q
    ||||||||||| |||||||||||||||||| |||| || || |||| | ||  || |||||||| || | |||||||| ||| ||||||||    
T  31520651 cttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtgggctaatttagctttttcaaaac 31520561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 389 - 471
Target Start/End: Complemental strand, 31789016 - 31788935
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttc 471  Q
    ||||||||||| |||||||||||||||||| || | || || |||||| ||| || ||||||||||| | ||| |||||||||    
T  31789016 cttgggatctgggagtgtgctcctcctcgaggttttaggtttgattatctct-gtgtcaatttgggtgggctagtttaacttc 31788935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 8075161 - 8075084
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| | || |||| |||||||   ||| || ||||||||||| | |||||||| |||||||||||    
T  8075161 gagtgtgctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttcttcaaaa 8075084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 30311336 - 30311381
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||    
T  30311336 cttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 30311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 31608570 - 31608525
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||| |||||| |||||||||||||||||| |||||||||| ||||    
T  31608570 cttgagatctgggagtgtgctcctcctcgaggtctcagatttgatt 31608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 49397575 - 49397498
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| |||||||| ||||||  ||||||||| |  | | ||||||| ||| |||||||||| |||||||||||    
T  49397575 gagtgtgcttctcctcgaggtctcatgttcgattatcttagatgtcaatttaggtggactaatttagcttcttcaaaa 49397498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 1410707 - 1410618
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||| | | |||| |||| |||||||| |||||||| |||||||||||    
T  1410707 gacttgggatatgggagtgtgctcctcctcgaggtctcag-ttcgattctctgtggtgtcaa-ttgggtaggctaatttagcttcttcaaaa 1410618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 16773835 - 16773926
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||| ||| |||||||||||||||||| ||||||| ||||||| | |||| |  |||||| ||| | |||||||| |||||||||||    
T  16773835 gacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttcttcaaaa 16773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 19949663 - 19949573
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| ||||| |||||||||||||||||||  |||||| ||| ||| |  | ||| ||||||||| ||||||||||||||||||||||||    
T  19949663 gacttgagatct-agagtgtgctcctcctcgagctctcaggttcaattttcaccggtgtcaatttggatagactaatttaacttcttcaaaa 19949573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 22020908 - 22020863
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  22020908 cttgggatctgggagtgtgctcctccttgaagtctcagattcgatt 22020863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 29173532 - 29173609
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||| || |||| ||||||||| |||||| ||||||| ||| | |||||||| |||||| ||||    
T  29173532 gagtgtgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttcttaaaaa 29173609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 14495853 - 14495806
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  14495853 gacttgggatctgggagtgtgctcctcctcgaggtctcagatttgatt 14495806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 27596357 - 27596402
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||    
T  27596357 cttgggatctgagagtgtcctcctcctcgaggtcttagattcgatt 27596402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 29075811 - 29075900
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    ||||||||||| ||||||||||||||||||  |||||  ||||||| | ||||||  |||||| | | | |||||||| |||||||||||    
T  29075811 cttgggatctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaatttagcttcttcaaaa 29075900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Original strand, 29210400 - 29210477
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||||| || |||  ||| ||| | |||||||||||||| ||| |||||||||| |||||| ||||    
T  29210400 gagtgtgctcctcctcgaggtttcaagttcaattctctctggtatcaatttaggtggactaatttagcttcttaaaaa 29210477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 41165675 - 41165630
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  41165675 cttgggatctgggagtgtgctccttctcgaagtcttagattcgatt 41165630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 473
Target Start/End: Original strand, 21086748 - 21086828
Alignment:
Q  393 ggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttctt 473  Q
    |||||||  ||||||||||||||| |  |||||||||||||||| |||||| ||||||| | |   |||||||||||||||    
T  21086748 ggatctggcagtgtgctcctcctcaagatctcagattcgattatctctggtgtcaatttagatgacctaatttaacttctt 21086828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 43442231 - 43442315
Alignment:
Q  394 gatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||| |||||||||||||||| | ||||||| ||||||| | |||| | ||||||||| | | ||||||||  ||||||||||    
T  43442231 gatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaatttagtttcttcaaaa 43442315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 472
Target Start/End: Original strand, 1279034 - 1279104
Alignment:
Q  402 agtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttct 472  Q
    |||||||||||| |||| ||||||  || |||| | |||||| ||||||||||| |||||||||| |||||    
T  1279034 agtgtgctcctcatcgaggtctcaagttagattctctctggtgtcaatttgggtggactaatttagcttct 1279104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 41679 - 41590
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||| ||||||||||| ||||||||||||| ||||||| ||| ||| | |||| | ||||||||||| | |||||||| | |||||||||    
T  41679 cttgagatctgagagtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaatttagcctcttcaaaa 41590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 11558 - 11622
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgg 453  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||| | |||||| | |||||||    
T  11558 cttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgttaatttgg 11622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 474
Target Start/End: Original strand, 24095 - 24168
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttc 474  Q
    ||||||||||||| ||||||| |||| ||||||||| |||| |  ||||||| || | ||||||||||||||||    
T  24095 gagtgtgctcctcttcgaagtgtcaggttcgattatctctgatgccaatttgagtgggctaatttaacttcttc 24168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 15369 - 15281
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaa 477  Q
    ||||||| ||| |||||||||||||||||| ||||||| ||||||| | || | |  |||||| ||| | |||||||| ||||||||||    
T  15369 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttcttcaaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 6953 - 6879
Alignment:
Q  401 gagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||||||||||| ||||||||| ||||   || |||||| |||||||| || | |||||||| |||||||||||    
T  6953 gagtgtgctcctcctcaaagtctcaggttcg---atctctggtgtcaatttgagtgggctaatttagcttcttcaaaa 6879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 478
Target Start/End: Original strand, 49336 - 49425
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 478  Q
    |||||||| |||||||||||||||| |||| || |||| ||||||| | || ||| |||||||  || |  |||||||||||||| ||||    
T  49336 cttgggatttgagagtgtgctcctcttcgaggtatcaggttcgattctctccggtgtcaatttaagtgggttaatttaacttcttaaaaa 49425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University