View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16034_high_11 (Length: 347)
Name: NF16034_high_11
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 515668 - 515349
Alignment:
| Q |
10 |
attattctattgtcaatctctctcgcatttgcatgatggaatatgagaaattgttgtaatgatcgagcttctagagactgggactgagactctaggtaat |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
515668 |
attatcctattgtcaatctctctcgcatttgcatgatggaatatgagaaattgttgtaatgatcgagcttctagagactgggactgagactctaggtaat |
515569 |
T |
|
| Q |
110 |
attaacattaaaagaaaaaacaatgattatggtgttaatgttgagagaaaatcaagagagatttaaataataaaaatagtaaaatggtgaggagtgagaa |
209 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
515568 |
attaacattaaaa--aaaaacaatgattatgatgttaatgttgagagaaaatcaagagagatttaaataataaaaatagtaaaatggtgaggagtgagaa |
515471 |
T |
|
| Q |
210 |
gagttttggagtaaggttatggaagttaagggaatgaggagagttagaatcgaaatattagcaaagaataagtcacagggaaccttgaccttcaagtttg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
515470 |
gagttttggagtaaggttatggaagttaagggaatgaggagagttagaatcgaaatattagcaaagaataagtcacaaggaaccttgaccttcaagtttg |
515371 |
T |
|
| Q |
310 |
tgatggatttggtagggggaaa |
331 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
515370 |
tgatggatttggtagggggaaa |
515349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University