View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16034_high_15 (Length: 284)
Name: NF16034_high_15
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 9822273 - 9822027
Alignment:
| Q |
14 |
aaataaagattcaacctagaaggaatctataacttatatctagaggtaatccaaaaagaatatatcctaagacagtgataaacagagttgttgtgtgtga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9822273 |
aaataaagattcaacctagaaggaatctataacttatatctagaggtaatccaaaaaaaaaatatcctaagacagtgataaacagagttgttgtgtgt-- |
9822176 |
T |
|
| Q |
114 |
ctcaaaatc-gagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgtttttcaagaaagttgaaatgcaaggcggtttc |
212 |
Q |
| |
|
||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9822175 |
--caaaatctgtgttggaagcattccgtggaaaacgtgaggcattttcactctaaagctgctacttgtttttcaagaaagttgaaatgcgaggcggtttc |
9822078 |
T |
|
| Q |
213 |
aatgcttgacaaatcttatgggccacatgactatttcttgaagcacagggc |
263 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9822077 |
aatgcttgacaaatcttatgggccacacgactatttcttgaagcacagggc |
9822027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 13528384 - 13528485
Alignment:
| Q |
101 |
ttgttgtgtgtgactcaaaatcgagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgt-ttttcaagaaagttgaaat |
199 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||| | ||||| |||||||||||| |||| |||| ||||||| | || ||||||||| |||||| |
|
|
| T |
13528384 |
ttgttgtgtgtgactcaaaattgttttgggagcattctattgaaaatgtgaggcatttttactcctaagccgctacttatgttctcaagaaagctgaaat |
13528483 |
T |
|
| Q |
200 |
gc |
201 |
Q |
| |
|
|| |
|
|
| T |
13528484 |
gc |
13528485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 13617919 - 13618020
Alignment:
| Q |
101 |
ttgttgtgtgtgactcaaaatcgagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgt-ttttcaagaaagttgaaat |
199 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||||| | ||||| |||||||||||| |||| |||| ||||||| | || ||||||||| |||||| |
|
|
| T |
13617919 |
ttgttgtgtgtgactcaaaattgttttgggagcattctattgaaaatgtgaggcatttttactcctaagccgctacttatgttctcaagaaagctgaaat |
13618018 |
T |
|
| Q |
200 |
gc |
201 |
Q |
| |
|
|| |
|
|
| T |
13618019 |
gc |
13618020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 38985879 - 38985681
Alignment:
| Q |
14 |
aaataaagattcaacctagaaggaatctataacttatatctagaggtaat--------ccaaaaagaatatatcctaagacagtgataaacagagttgtt |
105 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| |||||||||| ||||||| ||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
38985879 |
aaataaagattcaacctagaaggtaacaataacttatatgtagaggtaattaattaatccaaaaa-aat-tatccaaagacaatgataaacagagttgtt |
38985782 |
T |
|
| Q |
106 |
gtgtgtgactcaaaatcgagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgtttttcaagaaagttgaaatgcaagg |
205 |
Q |
| |
|
||||||||||||| |||| |||||||| |||| | |||||||||||||||||||| |||||||| |||||||||| |||| |||| |||||||||||| |
|
|
| T |
38985781 |
gtgtgtgactcaagatcgtgttggaagtattctatggaaaacgtgaggcattttcattctaaagcctctacttgtttctcaaaaaagctgaaatgcaagg |
38985682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 38985159 - 38985099
Alignment:
| Q |
173 |
ctacttgtttttcaagaaagttgaaatgcaaggcggtttcaatgcttgacaaatcttatgg |
233 |
Q |
| |
|
|||||||||| ||||||||| | |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
38985159 |
ctacttgtttctcaagaaagctaaaatgcaatccggtttcattgcttgacaaatcttatgg |
38985099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University