View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16034_high_21 (Length: 255)
Name: NF16034_high_21
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_high_21 |
 | |
|
| [»] scaffold0608 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 46933161 - 46933388
Alignment:
| Q |
9 |
aggagcacagaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttag |
108 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46933161 |
aggatcacaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttag |
46933260 |
T |
|
| Q |
109 |
ccaatcttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46933261 |
ccaatcttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttct |
46933360 |
T |
|
| Q |
209 |
gaccaatgaccagttcttgtctaataga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46933361 |
gaccaatgaccagttcttgtctaataga |
46933388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 46926306 - 46926516
Alignment:
| Q |
19 |
aaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || | |
|
|
| T |
46926306 |
aaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagc |
46926405 |
T |
|
| Q |
119 |
aaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgac |
218 |
Q |
| |
|
|| |||||||| || |||| |||||||||||||||| |||||||||| | || |||||||||| | ||||| || ||||| || || ||||||||| |
|
|
| T |
46926406 |
gaaaattcatggccctttaatgagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgac |
46926505 |
T |
|
| Q |
219 |
cagttcttgtc |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
46926506 |
aagttcttgtc |
46926516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 11107752 - 11107602
Alignment:
| Q |
19 |
aaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttac |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || ||| | |
|
|
| T |
11107752 |
aaccaacctataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgc |
11107653 |
T |
|
| Q |
119 |
aaagattcatggttctataataagtctcaagtttggccgaataaccactgt |
169 |
Q |
| |
|
|| || ||||| || |||| ||||||||| | || | |||||||||||| |
|
|
| T |
11107652 |
caaaatatatggtcctttaatgagtctcaagctagggcaaataaccactgt |
11107602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 3191 - 3041
Alignment:
| Q |
19 |
aaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttac |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || ||| | |
|
|
| T |
3191 |
aaccaacctataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgc |
3092 |
T |
|
| Q |
119 |
aaagattcatggttctataataagtctcaagtttggccgaataaccactgt |
169 |
Q |
| |
|
|| || ||||| || |||| ||||||||| | || | |||||||||||| |
|
|
| T |
3091 |
caaaatatatggtcctttaatgagtctcaagctagggcaaataaccactgt |
3041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 29975458 - 29975376
Alignment:
| Q |
30 |
aagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaa |
112 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
29975458 |
aagcttccaccaggacctactcctcttcccttcataggaaacctccttcaattagggaaaaaacctcacaaatccttagccaa |
29975376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University