View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_high_24 (Length: 245)
Name: NF16034_high_24
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 39220147 - 39220330
Alignment:
| Q |
31 |
tattcggtctgaagtgtatacatgctttgtatgcaagaattactcga-------tacatcatgttttaaggtgcaaggatcgtgggatctaatttgaaag |
123 |
Q |
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| T |
39220147 |
tattcggtctgaagtgtatacaggctttgtatgcaagagttactcgatagtcgatacatcatattttaaggtgcaaggatcgtgggatctaatttgaaag |
39220246 |
T |
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| Q |
124 |
ctcaaagttcctccaaatgtatttatttttgtgtggagagtttgtagaaactgtttatcgacacacatgtgcctcaaagataaa |
207 |
Q |
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| T |
39220247 |
ctcaaagttcctccaaatgtatttatttttgtgtggagagtttgtagaaactgtttatcgacacacatgtggctcaaagataaa |
39220330 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 10258236 - 10258320
Alignment:
| Q |
56 |
tttgtatgcaagaattactcgatacatcatgttttaaggtgcaaggatcgtgggatctaatttgaaagctcaaagttcctccaaa |
140 |
Q |
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| T |
10258236 |
tttgtgtgcaagaattacttgatacatcccatttcaaggtacaaggctcttggaatctaatttggaagctcaagattcctccaaa |
10258320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 33172006 - 33171925
Alignment:
| Q |
56 |
tttgtatgcaagaattactcgatacatcatgttttaaggtgcaaggatcgtgggatctaatttgaaagctcaaagttcctcc |
137 |
Q |
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| T |
33172006 |
tttgtgtgcaagaattacttgatacatcctatttcaaagtagaaggatcttggaatctaatttggaagctcaagattcctcc |
33171925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 15746496 - 15746412
Alignment:
| Q |
56 |
tttgtatgcaagaattactcgatacatcatgttttaaggtgcaaggatcgtgggatctaatttgaaagctcaaagttcctccaaa |
140 |
Q |
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| T |
15746496 |
tttgtgtgcaagaattacttgatacatctcatttcaaggtacaaggctcttggaatctaatctgcaagctcaagattcctccaaa |
15746412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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