View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_high_28 (Length: 225)
Name: NF16034_high_28
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15380574 - 15380363
Alignment:
| Q |
1 |
tggttcaataattttctacagatacatttttgattcctgaagaagctcacacaatacctattttcaattttgcaagtcttgtcctcgcagtggtagtacc |
100 |
Q |
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| T |
15380574 |
tggttcaataattttctacagatacatttttgattcctgaagaagctcacacaatacctattttcaattttgcaagtcttgtcctcgcagtggtagtacc |
15380475 |
T |
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| Q |
101 |
tcaacggctctgattcattgatattgaatttgagtttccggtaataaagtcccatgggaacccttggcttcagtagcatttctttgcaggttttattcca |
200 |
Q |
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| T |
15380474 |
tcaacggctctgattcatcgatattgaatttgagtttccggtaataaagtcccatgggaacccttggtttcagtagcatttctttgcaagttttattcca |
15380375 |
T |
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| Q |
201 |
cagatattcttc |
212 |
Q |
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|| || |||||| |
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| T |
15380374 |
caaatgttcttc |
15380363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 24150923 - 24150996
Alignment:
| Q |
13 |
tttctacagatacatttttgattcctgaagaagctcacacaatacctattttcaattttgcaagtcttgtcctc |
86 |
Q |
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| T |
24150923 |
tttccacaaatacatgtttgatttctgaataagctcacacaagtcctgttttcaattttgcaagaattgtcctc |
24150996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 10989051 - 10989014
Alignment:
| Q |
163 |
cttggcttcagtagcatttctttgcaggttttattcca |
200 |
Q |
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| T |
10989051 |
cttggcttcagtagcatttttttgcaggtttgattcca |
10989014 |
T |
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