View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_high_6 (Length: 380)
Name: NF16034_high_6
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 44659114 - 44658765
Alignment:
| Q |
13 |
aaaatgatcatcaaaaggcggaccaacgatgggagatggtggatcaggacttagaggcggcaactgcggtatgtagagttgtgactggtgaggaacctga |
112 |
Q |
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| T |
44659114 |
aaaatgatcatcaaaaggcggaccaacgatgggagatggtggatcaggacttagaggcggcaactgcggtatgtagagttgtgactggtgaggaacctga |
44659015 |
T |
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| Q |
113 |
tgactctgggattgagagggtggttcaccagtagaagaatcaatgatagttgtttgttcttgattttgcatcttgaggatatccctttcttcttttaact |
212 |
Q |
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| T |
44659014 |
tgactctgggattgagagggtggttcaccagaagaagaatcaatgatagttgtttgttcttgattttgcatcttgaggatatccctttcttcttttaact |
44658915 |
T |
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| Q |
213 |
tttctaagaaagctgtaaaaacacaagggtatatatccttggaattaattcatatatacctactatataaccagaaagataagaatctagaattaataca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44658914 |
tttctaagaaagctgtaaaaacacaagggtatatatccttggaattaattcatatatacctactatataaccagaaagataagaatctggaattaataca |
44658815 |
T |
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| Q |
313 |
ttgaatttaaagttttaccatgaattacttaatttcacctatttaatttg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44658814 |
ttgaatttaaagttttaccatgaattacttaatttcacctatttaatttg |
44658765 |
T |
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