View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16034_high_7 (Length: 377)

Name: NF16034_high_7
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16034_high_7
NF16034_high_7
[»] chr1 (2 HSPs)
chr1 (1-284)||(39860642-39860925)
chr1 (289-371)||(39859703-39859785)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-284)||(58852-59135)
[»] chr7 (4 HSPs)
chr7 (1-284)||(40913960-40914243)
chr7 (1-255)||(37117573-37117829)
chr7 (186-231)||(2565176-2565221)
chr7 (186-246)||(47677241-47677301)
[»] chr3 (4 HSPs)
chr3 (1-284)||(25833449-25833732)
chr3 (162-284)||(36369361-36369483)
chr3 (72-129)||(36369600-36369658)
chr3 (288-320)||(25833077-25833109)
[»] chr8 (4 HSPs)
chr8 (1-284)||(3297739-3298021)
chr8 (186-289)||(31279336-31279439)
chr8 (174-268)||(37657320-37657415)
chr8 (64-132)||(3295027-3295097)
[»] chr4 (1 HSPs)
chr4 (1-284)||(46396058-46396336)
[»] chr2 (4 HSPs)
chr2 (174-284)||(9168886-9168995)
chr2 (186-284)||(45628026-45628124)
chr2 (186-289)||(44995888-44995991)
chr2 (13-125)||(9168647-9168760)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39860925 - 39860642
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  39860925 atggtggttgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccatttctaatttgcttcaatttgggt 39860826  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39860825 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 39860726  T
Q  201 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39860725 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 39860642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 39859785 - 39859703
Alignment:
Q  289 ggagtgtgttagagagtgtgatgggagcatttattttaattgctttctattttagagtgtttttgagtgcgaattttcttcga 371  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||    
T  39859785 ggagtgtgttagagaatgtgatgggagcatttattttaattgctttctatttcagagtgtttttgactgcgaaattttttcga 39859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 59135 - 58852
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  59135 atggtggttgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccatttctaatttgcttcaatttgtgt 59036  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59035 cccttgtacaccctttttcaagaagagccatggaaacatgtcatcatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 58936  T
Q  201 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  58935 gttgttgttagaaattgaaaacgaaattgaatcgaaaccggagaaatagggtattgaaattgagaacgagaatgagggagaaat 58852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 40913960 - 40914243
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40913960 atggtggttgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccatttctaatttgcttcaatttgtgt 40914059  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40914060 cccttgtacaccctttttcaagaagagccatggaaacatgtcatcatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 40914159  T
Q  201 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  40914160 gttgttgttagaaattgaaaacgaaattgaatcgaaaccggagaaatagggtattgaaattgagaacgagaatgagggagaaat 40914243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 37117573 - 37117829
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    |||||||  ||||||||| |||||||| || ||||||||||||||||||||||||   |||||||||||| |||| ||||| ||||||||||| ||||||    
T  37117573 atggtggtggtggtgctaaagacatcaacactatcctcctccttcaaaagtaacgaccctatactaagaagacccatttctgatttgcttcaaattgtgt 37117672  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatc-ttttcttttaggttgcaattccaaaaattgataagagg 199  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  37117673 cccttgtacaccccttttcaagaagagccctggaaaaatgtcatcatcctcaactttcatctttttcttttagattgtaattccaaaaattgataagagg 37117772  T
Q  200 ggttgttgttagaaattgaaaatga-aattgaattgaaaccggagaaggagggtatt 255  Q
    ||  |    | ||||||||||| || ||||||||| ||| |||||||||||||||||    
T  37117773 gggagggtattgaaattgaaaacgagaattgaattaaaatcggagaaggagggtatt 37117829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 2565176 - 2565221
Alignment:
Q  186 aaattgataagaggggttgttgttagaaattgaaaatgaaattgaa 231  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  2565176 aaattgagaagaggggctgttgttagaaattgaaaatgaaattgaa 2565221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 47677241 - 47677301
Alignment:
Q  186 aaattgataagaggggttgttgttagaaattgaaaatgaaattgaattgaaaccggagaag 246  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||| |||||||    
T  47677241 aaattgagaagaggggttgttgttagaaattgaaaataaaagtgaattagaacgggagaag 47677301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 25833732 - 25833449
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  25833732 atggtggttgtggtgctatagacatcagcattatcctcctccttcaaaagtaacagtgctatactaagaatacccatttctaatttgcttcaatttgtgt 25833633  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25833632 cccttgtacaccctttttcaagaagagccatggaaacatgccatcatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 25833533  T
Q  201 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25833532 gttgttgttagaaattgaaaacgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatggggcagaaat 25833449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 36369483 - 36369361
Alignment:
Q  162 ttttcttttaggttgcaattccaaaaattgataagaggggttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaatt 261  Q
    ||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||    
T  36369483 ttttcttttattttgcaatttcaaaaattgataagaggagttgttgttagaaattgaaaacgaaattgaattaaaatcggagaagaagggtattgaaatt 36369384  T
Q  262 gagaacgagaatgggggagaaat 284  Q
    |||| ||||||||||||||||||    
T  36369383 gagagcgagaatgggggagaaat 36369361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 36369658 - 36369600
Alignment:
Q  72 acccgtttctaatttgcttcaatttgt-gtcccttgtacaccctttttcaagaagagcc 129  Q
    |||| ||||| |||||||||||||||| ||||||| |||| || |||||||||||||||    
T  36369658 acccatttctgatttgcttcaatttgtggtcccttatacatcccttttcaagaagagcc 36369600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 25833109 - 25833077
Alignment:
Q  288 aggagtgtgttagagagtgtgatgggagcattt 320  Q
    ||||||||||||||||||||||||| |||||||    
T  25833109 aggagtgtgttagagagtgtgatggtagcattt 25833077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 3298021 - 3297739
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  3298021 atggtggttgtggtgctatagacatcagcaatatcctcctccgtcaaaagtaacggggctatactaagaatacccatttctaatttgcttcaatttgtgt 3297922  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 200  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3297921 cccttgtacaccccttttcaagaagagccatggaaac-tgtcatcatcctcaactttcatctttgcttttaggttgcaattccaaaaattgataagaggg 3297823  T
Q  201 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3297822 gttgttgttagaaactgaaaacgaaattgatttgaaaccggagaaggagggtattgatattgagaacgagaatgggggagaaat 3297739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 31279336 - 31279439
Alignment:
Q  186 aaattgataagaggggttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaata 285  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| |||||| || ||||||| ||||||     
T  31279336 aaattgagaagagggtttgttgttagaaattgaaaatgaaattgaattagaacgggagaaggagggtattgaaactgagaaagaaaatggggaagaaatg 31279435  T
Q  286 gaag 289  Q
    ||||    
T  31279436 gaag 31279439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 37657415 - 37657320
Alignment:
Q  174 ttgcaattccaaaaattgataagagggg-ttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacg 268  Q
    |||||||| || ||||||| |||||||| ||  ||||| ||||||||||||||| |||||| |||  ||||||||| ||| |||||||||||||||    
T  37657415 ttgcaattacacaaattgagaagagggggttcatgttacaaattgaaaatgaaagtgaattaaaatgggagaaggatggtgttgaaattgagaacg 37657320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 3295027 - 3295097
Alignment:
Q  64 ctaagaatacccgtttctaattt-gcttcaatttg-tgtcccttgtacaccctttttcaagaagagccatg 132  Q
    ||||||| |||| ||||| |||| ||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  3295027 ctaagaagacccatttctgattttgcttcaatttgctgtcccttatacaccccttttcaagaagacccatg 3295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 46396058 - 46396336
Alignment:
Q  1 atggtggctgtggtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgtgt 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  46396058 atggtggttgtggtcctatagacatcagcaatatcctcctccttcaaaagtaacgatgctatactaagaatacccatttctaatttgcttcaatttgtgt 46396157  T
Q  101 cccttgtacaccctttttcaagaagagccatggaaacatgtcattatcctcaactttcatcttttcttttaggttgcaattccaaaaattgataagaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||     |||| |||||||||||||||||||||||||||||||||||| |    
T  46396158 cccttgtacaccctttttcaagaagagccatggaaacatgtcatcatcctca-----catcctttcttttaggttgcaattccaaaaattgataagagag 46396252  T
Q  201 gttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46396253 gttgttgttagaaattgaaaacgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgaggatgggggagaaat 46396336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 9168886 - 9168995
Alignment:
Q  174 ttgcaattccaaaaattgataagaggggttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaat 273  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||||| ||||| |||||||    
T  9168886 ttgcaatttcaaaaattgataagaggagttgttgttagaaattgaaaac-aaattgaattaaaatcggagaaggagggtattgaaactgagagcgagaat 9168984  T
Q  274 gggggagaaat 284  Q
    ||| |||||||    
T  9168985 gggagagaaat 9168995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 45628124 - 45628026
Alignment:
Q  186 aaattgataagaggggttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaat 284  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||| ||||||| | ||||| ||||||||||| ||||| || ||||||||    
T  45628124 aaattgagaagaggggttgttgttagaaattgaaaataaaagtgaattagaacgggagaagaaaggtatggaaattgagaatgagaacggaggagaaat 45628026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 44995991 - 44995888
Alignment:
Q  186 aaattgataagaggggttgttgttagaaattgaaaatgaaattgaattgaaaccggagaaggagggtattgaaattgagaacgagaatgggggagaaata 285  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||  ||  ||||||| | ||||| ||||||||||| ||||| || ||||||||     
T  44995991 aaattgagaagaggggttgttgttagaaattgaaaataaaagtgaattagaatgggagaagaaaggtatggaaattgagaatgagaacggaggagaaatg 44995892  T
Q  286 gaag 289  Q
    ||||    
T  44995891 gaag 44995888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 9168647 - 9168760
Alignment:
Q  13 gtgctatagacatcagcaatatcctcctccttcaaaagtaacggtgctatactaagaatacccgtttctaatttgcttcaatttgt-gtcccttgtacac 111  Q
    |||||| ||||| || ||| ||||||||||||||||||||||||  | |||| ||||  | || ||||| |||||||||||||||| ||||||||||||     
T  9168647 gtgctagagacaacaacaagatcctcctccttcaaaagtaacggcaccataccaagaggatccatttctgatttgcttcaatttgtggtcccttgtacat 9168746  T
Q  112 cctttttcaagaag 125  Q
    || |||||||||||    
T  9168747 cccttttcaagaag 9168760  T

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