View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_low_10 (Length: 348)
Name: NF16034_low_10
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 67 - 348
Target Start/End: Complemental strand, 38596605 - 38596323
Alignment:
| Q |
67 |
actgtgtcttgatgatgccatcaagaatggtgtatttgaccattatgcaagaattctcgtggacatggatcttttaagaagattatttgattannnnnnn |
166 |
Q |
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| T |
38596605 |
actgtgtcttgatgatgccatcaagaatggtgtatttgaccattatgcaagaattctcgtggacatggatcttttaagaagattatttgataattttttt |
38596506 |
T |
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| Q |
167 |
-gaaccaaaatggtttgaagaagaatgacctctaattttcattttgatggtaagatataagagaacaattttattccctaatgtttgtttcatgcgtaga |
265 |
Q |
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| T |
38596505 |
tgaaccaaaatggtttgaagaagaatgacctctaattttcattttgatggtaagatataagagaacaattttattccctaatgtttgtttcatgcgtaga |
38596406 |
T |
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| Q |
266 |
atgtcaattgaatctaaggatttttatcctctgaaaaatacatgaagaactccaagaatgtgagaatgaagtatcttataaaa |
348 |
Q |
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| T |
38596405 |
atgtcaattgaatctaaggatttttatcctctgaaaaatacatgaagaactccaagaatgtgagaatgaagtatcttataaaa |
38596323 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 49073794 - 49073838
Alignment:
| Q |
221 |
tataagagaacaattttattccctaatgtttgtttcatgcgtagaa |
266 |
Q |
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| T |
49073794 |
tataagagaacaaatt-attccataatgtttgtttcatgcgtagaa |
49073838 |
T |
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