View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_low_13 (Length: 294)
Name: NF16034_low_13
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 45303592 - 45303322
Alignment:
| Q |
1 |
atttcacctcacacatacaaagaaagagaaaacgcttttatccacttaaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcc |
100 |
Q |
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| T |
45303592 |
atttcacctcacacatacaaagaaagagaaaacgcttttatccacttaaatactagtagtactcatcaaaatgaatctgatcaaacccttcaacttttcc |
45303493 |
T |
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| Q |
101 |
caataaggaatggagatcatggatgcactgnnnnnnnnnnnnnnnnnnnnaacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaa |
200 |
Q |
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| T |
45303492 |
caataaggaatggagatcatggatgcactg---atcatcatcatcatcataacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaa |
45303396 |
T |
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| Q |
201 |
ccagtttattgagtttcttcccttgaaaaactgattagaaaagactttgcttttttgtttgttaggtgttggat |
274 |
Q |
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| T |
45303395 |
ccagtttattgagtttcttcccttgaaaaactgattagaaaagactttgcttttttgtttgttaggtgttggat |
45303322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 45150317 - 45150267
Alignment:
| Q |
73 |
gaatctgatcaaacccttcaacttttcccaataaggaatggagatcatgga |
123 |
Q |
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| T |
45150317 |
gaatctgaccaaacccttcaacttttcccaataaggaatggaagtcatgga |
45150267 |
T |
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