View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_low_16 (Length: 284)
Name: NF16034_low_16
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 41127988 - 41128247
Alignment:
| Q |
9 |
catcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaactcacaatcacaacaattt |
108 |
Q |
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| T |
41127988 |
catcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaactcataatcacaacaattt |
41128087 |
T |
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| Q |
109 |
tagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagactcttgatggaagtcaagag |
208 |
Q |
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| T |
41128088 |
tagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattttctaccaagactcttgatggaagtcaagat |
41128187 |
T |
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| Q |
209 |
cttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggt |
268 |
Q |
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| T |
41128188 |
cttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggt |
41128247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 41144693 - 41144434
Alignment:
| Q |
9 |
catcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaactcacaatcacaacaattt |
108 |
Q |
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| T |
41144693 |
catcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaactcaaaatcacaacaattt |
41144594 |
T |
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| Q |
109 |
tagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagactcttgatggaagtcaagag |
208 |
Q |
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| T |
41144593 |
tagcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattatctaccaagactcttgatggaagtcaagaa |
41144494 |
T |
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| Q |
209 |
cttagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataactggt |
268 |
Q |
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| T |
41144493 |
cttagacgaaagaaattaaaagatcttctaaatgatatgcataaaagcagcataactggt |
41144434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 41120275 - 41120022
Alignment:
| Q |
11 |
tcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaactcacaatcacaacaatttta |
110 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41120275 |
tcatcagatatggccaaagagattcttcatactcatgattcattgttcattgatagatctgttcctgataacacaacaactcataatcacaacaatttta |
41120176 |
T |
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| Q |
111 |
gcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagactcttgatggaagtcaagagct |
210 |
Q |
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| T |
41120175 |
gcttagtcttcctcccattttcacctctctggcaacaccttagaaaaatatgccataaccatttattctccaacaagactcttgatgcaagtcaagaact |
41120076 |
T |
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| Q |
211 |
tagacgtatgaaattaaaagatcttctaaatgatatgcataaaagcagcataac |
264 |
Q |
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| T |
41120075 |
tagacgtatgaaattaaaagactttctcaatgatatgcataaaagcagcttaac |
41120022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 41033927 - 41034186
Alignment:
| Q |
11 |
tcatcacatatggccaaagagattctttttacaaatgattcattgttcactgatagatctgttcctgataacacaacaactcacaatcacaacaatttta |
110 |
Q |
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|||||| ||||||| |||||||||||| ||| |||||||||||| | ||| |||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
41033927 |
tcatcagatatggctaaagagattcttaatactcatgattcattgtgctgtgacagatctgttcctgatatcacaacaactcatgatcacaacaatttta |
41034026 |
T |
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| Q |
111 |
gcttagttttcctcccattttcacctctttggcaacatcttaggaaaatatgtcataataatttattctctaccaagactcttgatggaagtcaagagct |
210 |
Q |
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| T |
41034027 |
gcatagttttcctcccattttcacctcttttgcaacaccttagaaaaacgtgccattatcatctattctcaaacaagaatcttgatgcaagtcaagaact |
41034126 |
T |
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| Q |
211 |
tagacgtatgaaattaaaagatcttctaaat--gatatgcataaaagcagcataactggt |
268 |
Q |
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| T |
41034127 |
tagacgtatgaaattgaaagatcttctcaatgagatatgcataaaagtagtttaactggt |
41034186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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