View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_low_20 (Length: 256)
Name: NF16034_low_20
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_20 |
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| [»] scaffold0008 (3 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 63838 - 63684
Alignment:
| Q |
85 |
tgaatgaaattactacgatgttgtgaaacttccttcaacatatgcaactctttctaaaggttttattgttgtagtcattccttggcggtgctgcagcatc |
184 |
Q |
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| T |
63838 |
tgaatgaaattactatgatgtttagtaacttccttcaacatatgcaactctttctaaaggttttattgttgtagtctttccttggcggtgctgcagcatc |
63739 |
T |
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| Q |
185 |
aggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattct |
239 |
Q |
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| T |
63738 |
aggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattct |
63684 |
T |
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Target: scaffold0008; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 63947 - 63879
Alignment:
| Q |
17 |
aatatgagcaattacagcccatgcagaaacaattttttgcctttgcagaggcgtctaaaacttttatat |
85 |
Q |
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| T |
63947 |
aatatgagcaattgcagcccatgcagaaacaattgtttgcctttgtagaggcgtctaaaacttttatat |
63879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 51467 - 51405
Alignment:
| Q |
177 |
gcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattct |
239 |
Q |
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| T |
51467 |
gcagcctcaggtgcactaacatctgttttgaggttaatcacaaaagcaatatttgaaaattct |
51405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 21090345 - 21090423
Alignment:
| Q |
145 |
ttttattgttgtagtcattccttggcggtgctgcagcatcaggtgctctaacatcggctttgaggttaattacaaaagc |
223 |
Q |
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| T |
21090345 |
ttttattgttgcagtcgttccttgctggttctgcagcgtctggtgctctaacatcagctttgagattaattacaaaagc |
21090423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 31524115 - 31524177
Alignment:
| Q |
177 |
gcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattct |
239 |
Q |
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| T |
31524115 |
gcagcctcaggtgcactaacatctgttttgaggttaatcacaaaagcaatatttgaaaattct |
31524177 |
T |
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