View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_low_27 (Length: 229)
Name: NF16034_low_27
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 33713730 - 33713925
Alignment:
| Q |
1 |
attgcctagaccttatattttagagaactttacctcatacccttatgcttatgtttctaccccatgaacaccctaaacttttcaaattacctttaagtat |
100 |
Q |
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| T |
33713730 |
attgcctagaccttatactttagaaaactttacctcatacccttatgcttatgtttctaccccatgaacaccctaaacttttcaaattacctttaagtat |
33713829 |
T |
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| Q |
101 |
aacaaataaaaaacaaatttgcacactcattttccaaaagagtaatgatatttttacaaaaacaatagagagaaaaataaagagaaaggtaaaggaggga |
200 |
Q |
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| T |
33713830 |
aacaaataaaaaacaaatttgcacactcattttccaaaagagtaatg------------aaacaatagagagaaaaataaagagagaggtaaaggaggga |
33713917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 6733518 - 6733569
Alignment:
| Q |
67 |
aacaccctaaacttttcaaattacctttaagtataacaaataaaaaacaaatt |
119 |
Q |
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| T |
6733518 |
aacaccctaaacttttgaaattacc-ttgactttaacaaataaaaaacaaatt |
6733569 |
T |
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