View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16034_low_3 (Length: 533)
Name: NF16034_low_3
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Complemental strand, 7383454 - 7382996
Alignment:
| Q |
17 |
tatcgggactattctttattgattttaggtggttgtaaaatgtaaattaacggtccatatatatcgagctctaattttttccaatgaaccaaacacgagc |
116 |
Q |
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| T |
7383454 |
tatcgggactattctttattgattttaggtggttgtaaaatgtaaattaacggtccatatatatcgagctctaattttttccaatgaaccaaacacgagt |
7383355 |
T |
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| Q |
117 |
ttgaagtcttcatcatctccatgattcccctgaaaatttatcaacaccgttctcccttcatcttctcctccatttccaaatcaaacccacttcaccctca |
216 |
Q |
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| T |
7383354 |
ttgaagtcttcatcatctccatgattcccctgaaaacttatcaacaccgttctcccttcatcttctcctccatttccaaaccaaacccacttcaccctca |
7383255 |
T |
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| Q |
217 |
ctttctctctcttccaccatctccaccgttgaaacttcctctcaaactcaaaccatgttcattccctcttcaaagggtttcaaatattgaagtggcaatt |
316 |
Q |
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| T |
7383254 |
ctttctctctcttccaccatctccaccattgaaacttcctctcaaactcaaaccatgttcgttccctcttcaaagggtttcaaatattgaagtggcaatt |
7383155 |
T |
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| Q |
317 |
ttcaacaatgaagaagttaaggatttgtcaccagaaggggaagtgtatcagaagacacttcagttggttgaatgttccatgtttgctgctcttactgggt |
416 |
Q |
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| T |
7383154 |
ttcaacaatgaagaagttaaggatttgtcaccagaaggggaagtgtatcagaagacacttcagttggttgaatgttccatgtttgctgctcttactgggt |
7383055 |
T |
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| Q |
417 |
tggtctacttcttgagtaatgctcttgctattgaggtttgttattgtgaattcaaattt |
475 |
Q |
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| T |
7383054 |
tggtctacttcttgagtaatgctcttgctattgaggtttgttattgtgaattcaaattt |
7382996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 419 - 478
Target Start/End: Complemental strand, 7382655 - 7382596
Alignment:
| Q |
419 |
gtctacttcttgagtaatgctcttgctattgaggtttgttattgtgaattcaaatttggg |
478 |
Q |
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| T |
7382655 |
gtctatttcttgagcaattcacttgccattgaggtttgttattgtgaattaaaatttggg |
7382596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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