View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16034_low_4 (Length: 485)

Name: NF16034_low_4
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16034_low_4
NF16034_low_4
[»] chr7 (9 HSPs)
chr7 (1-441)||(21410704-21411142)
chr7 (389-436)||(45709707-45709754)
chr7 (389-434)||(9871287-9871332)
chr7 (389-434)||(25242026-25242071)
chr7 (395-443)||(9183183-9183231)
chr7 (387-430)||(42262100-42262143)
chr7 (389-436)||(48771968-48772015)
chr7 (390-436)||(20952148-20952194)
chr7 (389-426)||(27776202-27776239)
[»] chr6 (5 HSPs)
chr6 (390-443)||(28363968-28364021)
chr6 (389-434)||(33549134-33549179)
chr6 (389-434)||(34786455-34786500)
chr6 (390-446)||(3925775-3925831)
chr6 (394-434)||(13227159-13227199)
[»] chr5 (6 HSPs)
chr5 (389-434)||(22020863-22020908)
chr5 (387-434)||(14495806-14495853)
chr5 (389-434)||(27596357-27596402)
chr5 (389-434)||(41165630-41165675)
chr5 (387-434)||(16773835-16773882)
chr5 (390-426)||(29692395-29692431)
[»] chr3 (16 HSPs)
chr3 (389-434)||(21960581-21960626)
chr3 (389-436)||(44743854-44743901)
chr3 (389-433)||(9557350-9557394)
chr3 (389-436)||(2667892-2667939)
chr3 (387-426)||(4844520-4844559)
chr3 (387-426)||(4870216-4870255)
chr3 (439-470)||(31717816-31717847)
chr3 (397-436)||(48583449-48583488)
chr3 (389-443)||(4222171-4222225)
chr3 (389-443)||(10445131-10445185)
chr3 (389-443)||(15048053-15048107)
chr3 (389-434)||(30311336-30311381)
chr3 (389-434)||(31608525-31608570)
chr3 (389-434)||(51903879-51903924)
chr3 (388-436)||(11642208-11642256)
chr3 (389-425)||(28928889-28928925)
[»] chr4 (12 HSPs)
chr4 (387-434)||(47044745-47044792)
chr4 (389-434)||(39509100-39509145)
chr4 (387-436)||(42644909-42644958)
chr4 (389-443)||(1730481-1730535)
chr4 (389-442)||(11592146-11592199)
chr4 (389-434)||(38869798-38869843)
chr4 (390-434)||(306311-306355)
chr4 (387-423)||(25869589-25869625)
chr4 (387-443)||(28635724-28635780)
chr4 (390-434)||(30938220-30938264)
chr4 (394-434)||(41346964-41347004)
chr4 (390-434)||(53496908-53496952)
[»] chr1 (9 HSPs)
chr1 (387-434)||(12587298-12587345)
chr1 (398-434)||(7219919-7219955)
chr1 (389-436)||(9879468-9879515)
chr1 (387-434)||(51814522-51814569)
chr1 (388-434)||(12259289-12259335)
chr1 (389-434)||(15786321-15786366)
chr1 (389-446)||(51703809-51703866)
chr1 (387-423)||(25297800-25297836)
chr1 (387-443)||(28411358-28411414)
[»] scaffold0299 (1 HSPs)
scaffold0299 (389-443)||(11558-11612)
[»] scaffold1367 (1 HSPs)
scaffold1367 (389-434)||(841-886)
[»] chr8 (9 HSPs)
chr8 (389-434)||(12281524-12281569)
chr8 (392-434)||(24675513-24675555)
chr8 (389-434)||(968392-968437)
chr8 (390-443)||(3305180-3305233)
chr8 (389-434)||(7140739-7140784)
chr8 (389-434)||(16852370-16852415)
chr8 (389-434)||(19703488-19703533)
chr8 (390-426)||(4830518-4830554)
chr8 (390-434)||(30774737-30774781)
[»] chr2 (9 HSPs)
chr2 (387-436)||(28846719-28846768)
chr2 (387-434)||(39715020-39715067)
chr2 (389-443)||(14500307-14500361)
chr2 (389-434)||(37480105-37480150)
chr2 (388-416)||(4438998-4439026)
chr2 (387-443)||(19244137-19244193)
chr2 (390-434)||(25931037-25931081)
chr2 (394-434)||(31573642-31573682)
chr2 (390-434)||(33582004-33582048)
[»] scaffold0258 (1 HSPs)
scaffold0258 (389-434)||(15324-15369)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 21411142 - 21410704
Alignment:
Q  1 agtttagtcattcatcttgttctacatggttcgtcacatcaaccttccatcctcagaatttatttattttt--aagnnnnnnntatcatgaaataagtta 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||       |||||||||||||||||    
T  21411142 agtttagtcattcatcttgttctacatggttcgtcacatcaaccttccatcctcaga-tttatttatttttttaagaaaaaaatatcatgaaataagtta 21411044  T
Q  99 aaaagacaggaaataatttcatgcgacaactgttacagtttctcgatcgtttgtccattgaaatttagcccccataacgggataggatgtctccatggaa 198  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21411043 aaaagacaggaaataatttcatgcgacag-tgttacagtttctcgatcgtttgtccattgaaatttagcccccataacgggataggatgtctccatggaa 21410945  T
Q  199 accaacaacattaaattgccacattgagaaaaggaacttaccacacaatgtgtgtgaaaattgtagggaaataaggggtgtcaaaccggctgtcttgcca 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21410944 accaacaacattaaaatgccacattgagaaaaggaacttaccacacaatgtgtgtgaaaattgtagggaaataaggggtgtcaaaccggctgtcttgcca 21410845  T
Q  299 ctatttaagttgtgtatattaaagtacaacatcgtcaacattctttgtttgtaacccacttgggttaatctggtggtattagacttaggactt-gggatc 397  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| ||||||||| |||||| || || ||||||    
T  21410844 ctatttaagt--tgtatattaaagtaccacatcgtcaacattcttcgtttgtaatccacttggtttgatcaggtggtatt-gacttaagatttggggatc 21410748  T
Q  398 tgagagtgtgctcctcctcgaagtctcagattcgattatgtctg 441  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  21410747 tgagagtgtgctcctcctcgaagtctcaaattcgattatgtctg 21410704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 45709754 - 45709707
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||    
T  45709754 cttgggatctgagagtgtgctcctcctcgaggtctcaggttcgattat 45709707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 9871332 - 9871287
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||| || ||||||||||||||||||||||||||||||||||    
T  9871332 cttgggatttgggagtgtgctcctcctcgaagtctcagattcgatt 9871287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 25242026 - 25242071
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||||    
T  25242026 cttgagatctgagagtatgctcctcctcgaggtctcagattcgatt 25242071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 9183231 - 9183183
Alignment:
Q  395 atctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||| |||||||||||||||| ||||||||| ||||||||| ||||||    
T  9183231 atctgggagtgtgctcctcctcaaagtctcaggttcgattatctctggt 9183183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 42262143 - 42262100
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattc 430  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  42262143 gacttgggatctgagagtgtgctcctcctaaaggtctcagattc 42262100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 48771968 - 48772015
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||||| ||||||||||||||| || ||||||| |||||||||    
T  48771968 cttgggatctgggagtgtgctcctccttgaggtctcaggttcgattat 48772015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 20952194 - 20952148
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    |||||| ||| |||||||||||||||| || ||||||||||||||||    
T  20952194 ttgggacctgggagtgtgctcctcctcaaaatctcagattcgattat 20952148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 27776202 - 27776239
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcag 426  Q
    |||||||  |||||||||||||||||||||||||||||    
T  27776202 cttgggacttgagagtgtgctcctcctcgaagtctcag 27776239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 28363968 - 28364021
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||| ||||||    
T  28363968 ttgggatctgcgagtgtgctcctcctcaaggtctcagattcgattatctctggt 28364021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 33549134 - 33549179
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  33549134 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 33549179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 34786500 - 34786455
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||    
T  34786500 cttgggatctgggagtgtgctccttctcgaagtctcaagttcgatt 34786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 3925775 - 3925831
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatc 446  Q
    |||| ||||||||||||| |||| ||| ||||||||||||| ||| | |||||||||    
T  3925775 ttggaatctgagagtgtgttccttctcaaagtctcagattcaattctctctggtatc 3925831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 13227199 - 13227159
Alignment:
Q  394 gatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||| |||||||||||||||||||||||||  |||||||    
T  13227199 gatctgggagtgtgctcctcctcgaagtctcaagttcgatt 13227159  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 22020908 - 22020863
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  22020908 cttgggatctgggagtgtgctcctccttgaagtctcagattcgatt 22020863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 14495853 - 14495806
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  14495853 gacttgggatctgggagtgtgctcctcctcgaggtctcagatttgatt 14495806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 27596357 - 27596402
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||    
T  27596357 cttgggatctgagagtgtcctcctcctcgaggtcttagattcgatt 27596402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 41165675 - 41165630
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  41165675 cttgggatctgggagtgtgctccttctcgaagtcttagattcgatt 41165630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 16773835 - 16773882
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  16773835 gacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 16773882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 29692431 - 29692395
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcag 426  Q
    |||||||||| |||||||||||||||| |||||||||    
T  29692431 ttgggatctgggagtgtgctcctcctcaaagtctcag 29692395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 21960581 - 21960626
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||    
T  21960581 cttgggacctgagagtgtgctcctcctcgaggtctcagattcgatt 21960626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 44743901 - 44743854
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  44743901 cttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattat 44743854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 9557350 - 9557394
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgat 433  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||    
T  9557350 cttgggatctgagagtgtgctcctcctcgagatctcaggttcgat 9557394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 2667892 - 2667939
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||||||    
T  2667892 cttgggatctgggagtgtgctcttcctcgaggtctcaggttcgattat 2667939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 4844559 - 4844520
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcag 426  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  4844559 gacttgggatctgggagtgtgctcctcctcgaggtctcag 4844520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 4870255 - 4870216
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcag 426  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  4870255 gacttgggatctgggagtgtgctcctcctcgaggtctcag 4870216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 470
Target Start/End: Original strand, 31717816 - 31717847
Alignment:
Q  439 ctggtatcctatttgggacgaagtgttcaaat 470  Q
    ||||||||||||||||||||||||||||||||    
T  31717816 ctggtatcctatttgggacgaagtgttcaaat 31717847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 436
Target Start/End: Complemental strand, 48583488 - 48583449
Alignment:
Q  397 ctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  48583488 ctgagagtgtcctcctcctcaaagtctcagattcgattat 48583449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 4222171 - 4222225
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||||||| |||||||||||||||| |||||| || ||||||| | ||||||    
T  4222171 cttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggt 4222225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 10445185 - 10445131
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||| ||| |||||||||||||||||| ||||||| ||||||| | ||||||    
T  10445185 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggt 10445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 15048107 - 15048053
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||||||| || ||||||||||||| | ||||||| ||||||||| ||||||    
T  15048107 cttgggatctgggaatgtgctcctcctcaaggtctcaggttcgattatctctggt 15048053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 30311336 - 30311381
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||    
T  30311336 cttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 30311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 31608570 - 31608525
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||| |||||| |||||||||||||||||| |||||||||| ||||    
T  31608570 cttgagatctgggagtgtgctcctcctcgaggtctcagatttgatt 31608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 51903924 - 51903879
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||||  ||||||| |||||||    
T  51903924 cttgggatctgggagtgtgctcctcctcgtggtctcaggttcgatt 51903879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 11642256 - 11642208
Alignment:
Q  388 acttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||||||||| |||| |||||||| | ||||||| |||||||||    
T  11642256 acttgggatctgagattgtgatcctcctcaaggtctcaggttcgattat 11642208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 28928925 - 28928889
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctca 425  Q
    |||||||||||||||||||||||||||| || |||||    
T  28928925 cttgggatctgagagtgtgctcctcctcaaattctca 28928889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 47044745 - 47044792
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  47044745 gacttgggatctgagagtttgctcctcctcgaggtctcaggttcgatt 47044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 39509100 - 39509145
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||    
T  39509100 cttgggatctgggagtgtgctcctcctcgaggtctcaggttcgatt 39509145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 42644958 - 42644909
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||||||||||||||| || ||||| ||||||||| |||||||||    
T  42644958 gacttgggatctgagagtgtgttcttcctcaaagtctcaggttcgattat 42644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 1730535 - 1730481
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||| ||||||||||||||||| || ||||||||||||| ||| | ||||||    
T  1730535 cttgggacctgagagtgtgctcctcttcaaagtctcagattctattctctctggt 1730481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 11592199 - 11592146
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctgg 442  Q
    ||||||| |||||||||||||||||||| | |||| || ||||||||| |||||    
T  11592199 cttgggacctgagagtgtgctcctcctccaggtcttaggttcgattatctctgg 11592146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 38869798 - 38869843
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||    
T  38869798 cttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 38869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 306355 - 306311
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||||||||||| ||||| |  |||||||||||||||||    
T  306355 ttgggatctgagagtgtgatcctctttaaagtctcagattcgatt 306311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 25869625 - 25869589
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtct 423  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  25869625 gacttgagatctgagagtgtgctcctcctcaaagtct 25869589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 28635724 - 28635780
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||||||||| ||||||||||||||| || |||| || ||||||| | ||||||    
T  28635724 gacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctggt 28635780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 30938264 - 30938220
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||  |||||||||||||||||| ||||||| |||||||    
T  30938264 ttgggatcttggagtgtgctcctcctcgaggtctcaggttcgatt 30938220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 41347004 - 41346964
Alignment:
Q  394 gatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||| |||| ||||||||||||||||||||| |||||||    
T  41347004 gatctgggagtatgctcctcctcgaagtctcaggttcgatt 41346964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 53496908 - 53496952
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||| ||| |||||||||||||||| |||||||||||| ||||    
T  53496908 ttgggacctgggagtgtgctcctcctcaaagtctcagatttgatt 53496952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 12587298 - 12587345
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  12587298 gacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgatt 12587345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 7219955 - 7219919
Alignment:
Q  398 tgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7219955 tgagagtgtgctcctcctcgaagtctcaggttcgatt 7219919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 9879468 - 9879515
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    |||||||||||||||||| ||| |||| || |||||||||||||||||    
T  9879468 cttgggatctgagagtgtactcttccttgaggtctcagattcgattat 9879515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 51814522 - 51814569
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||| ||||||||||||||||||||||| | ||||||| |||||||    
T  51814522 gacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgatt 51814569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 12259289 - 12259335
Alignment:
Q  388 acttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||| || |||||||||||||||||||||||||  |||||||    
T  12259289 acttgggatttgggagtgtgctcctcctcgaagtctcaagttcgatt 12259335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 15786366 - 15786321
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| |||||||||||||||| | ||||||| |||||||    
T  15786366 cttgggatctgggagtgtgctcctcctcaaggtctcaggttcgatt 15786321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 51703809 - 51703866
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggtatc 446  Q
    ||||| ||||| |||||||||||||||| |||| |||| ||||||| | |||||||||    
T  51703809 cttggaatctgggagtgtgctcctcctcaaagtttcaggttcgattctctctggtatc 51703866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 25297800 - 25297836
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtct 423  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  25297800 gacttaggatctgagagtgtgctcctcctcgaggtct 25297836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 28411358 - 28411414
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    |||||||||| |||||||||||||||| | || ||||||||||| ||| | ||||||    
T  28411358 gacttgggatatgagagtgtgctcctctttgaggtctcagattcaattctctctggt 28411414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 11558 - 11612
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||| | ||||||    
T  11558 cttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggt 11612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 886 - 841
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| || ||||||||||||||||||||||| |||||||    
T  886 cttgggatctgggaatgtgctcctcctcgaagtctcaggttcgatt 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 12281524 - 12281569
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||||    
T  12281524 cttgggacctgagagtgtgcccctcctcgaggtctcagattcgatt 12281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 24675555 - 24675513
Alignment:
Q  392 gggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||||||||||||| ||| | |||||||||||||||    
T  24675555 gggatctgagagtgtgctccttctcaaggtctcagattcgatt 24675513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 968392 - 968437
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  968392 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 968437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 3305233 - 3305180
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    |||||||||| ||| |||||||||||| | |||||| |||||||||| ||||||    
T  3305233 ttgggatctgggagcgtgctcctcctcaaggtctcaaattcgattatctctggt 3305180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 7140739 - 7140784
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||| | ||||||||||||||||  ||||||||||||||    
T  7140739 cttgggatctgggtgtgtgctcctcctcgagctctcagattcgatt 7140784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 16852370 - 16852415
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  16852370 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 16852415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 19703533 - 19703488
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| |||||||||||||||||||| | ||||||| |||||||    
T  19703533 cttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 19703488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 426
Target Start/End: Original strand, 4830518 - 4830554
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcag 426  Q
    |||||||||||||||||| |||||||||| |||||||    
T  4830518 ttgggatctgagagtgtgttcctcctcgaggtctcag 4830554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 30774781 - 30774737
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||||  |||||| |||||||||| |||||||||||||||    
T  30774781 ttgggatctggaagtgtgttcctcctcgaggtctcagattcgatt 30774737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 28846719 - 28846768
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattat 436  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||||    
T  28846719 gacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgattat 28846768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 39715020 - 39715067
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  39715020 gacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 39715067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 14500307 - 14500361
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||| | ||||||    
T  14500307 cttgagatctgggagtgtgctcctcctctaggtctcagattcgattctctctggt 14500361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 37480105 - 37480150
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| |||||||||||||||||||| | ||||||| |||||||    
T  37480105 cttgggacctgagagtgtgctcctcctcaaggtctcaggttcgatt 37480150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 416
Target Start/End: Complemental strand, 4439026 - 4438998
Alignment:
Q  388 acttgggatctgagagtgtgctcctcctc 416  Q
    |||||||||||||||||||||||||||||    
T  4439026 acttgggatctgagagtgtgctcctcctc 4438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 19244137 - 19244193
Alignment:
Q  387 gacttgggatctgagagtgtgctcctcctcgaagtctcagattcgattatgtctggt 443  Q
    ||||||||| |||||||||||||||||| | | ||||||| ||||||| | ||||||    
T  19244137 gacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggt 19244193  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 25931037 - 25931081
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||| ||||||||||| |  |||||||||||||||||||||||    
T  25931037 ttgggacctgagagtgtgtttatcctcgaagtctcagattcgatt 25931081  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 31573682 - 31573642
Alignment:
Q  394 gatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||||||||||||||||||| || ||||||| |||||||    
T  31573682 gatctgagagtgtgctcctccttgatgtctcaggttcgatt 31573642  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 33582004 - 33582048
Alignment:
Q  390 ttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    |||||| ||||||||||||||||||| || ||||||| |||||||    
T  33582004 ttgggacctgagagtgtgctcctccttgaggtctcaggttcgatt 33582048  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 15369 - 15324
Alignment:
Q  389 cttgggatctgagagtgtgctcctcctcgaagtctcagattcgatt 434  Q
    ||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  15369 cttgggacctgggagtgtgctcctcctcgaggtctcaggttcgatt 15324  T

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