View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16034_low_5 (Length: 445)
Name: NF16034_low_5
Description: NF16034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16034_low_5 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 29341494 - 29341910
Alignment:
| Q |
20 |
taactatttcaggtcataagtttttgggatgcgcatctccttgtggtgttttgataactagtttgaaatatatcaatgcactatctagagaagttgaata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29341494 |
taactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaata |
29341593 |
T |
|
| Q |
120 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgag |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29341594 |
tattgcttcaagggatgctaccatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcaaaaaaaggggtttaataggactcgag |
29341693 |
T |
|
| Q |
220 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29341694 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
29341793 |
T |
|
| Q |
320 |
tttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29341794 |
tttttgagagaccctttgatgatcactttactcgtagatggaatttagcaagcaatgaaaatattgcacatgtggtagtgttgaagcacattactattga |
29341893 |
T |
|
| Q |
420 |
aatgcttgacacctttg |
436 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29341894 |
aatgcttgacacctttg |
29341910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 29357521 - 29357937
Alignment:
| Q |
20 |
taactatttcaggtcataagtttttgggatgcgcatctccttgtggtgttttgataactagtttgaaatatatcaatgcactatctagagaagttgaata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29357521 |
taactatttcaggtcataagtttttgggatgcccatttccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaata |
29357620 |
T |
|
| Q |
120 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29357621 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatctttctttggtatgctctcaaaaaaaggggtttaataggactcgag |
29357720 |
T |
|
| Q |
220 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357721 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
29357820 |
T |
|
| Q |
320 |
tttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357821 |
tttttgagagaccctttgatgatcactttactcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattga |
29357920 |
T |
|
| Q |
420 |
aatgcttgacacctttg |
436 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29357921 |
aatgcttgacacctttg |
29357937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 425
Target Start/End: Complemental strand, 44660289 - 44659884
Alignment:
| Q |
20 |
taactatttcaggtcataagtttttgggatgcgcatctccttgtggtgttttgataactagtttgaaatatatcaatgcactatctagagaagttgaata |
119 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
44660289 |
taacaatttcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaatgcactatctagagatgttgacat |
44660190 |
T |
|
| Q |
120 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgag |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || |
|
|
| T |
44660189 |
cattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaa |
44660090 |
T |
|
| Q |
220 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
319 |
Q |
| |
|
||||| || |||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
44660089 |
aatgaggtgcatgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttg |
44659990 |
T |
|
| Q |
320 |
tttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgttgaagcacattactattga |
419 |
Q |
| |
|
| |||||||||||| | ||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
44659989 |
tgtttgagagacccctggatgatcactttactcgtagatggaatttggcaagcaacaaaaatactgcacatgtggtagtgttgaagcacgttactgttga |
44659890 |
T |
|
| Q |
420 |
aatgct |
425 |
Q |
| |
|
|||||| |
|
|
| T |
44659889 |
aatgct |
44659884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 44683434 - 44683053
Alignment:
| Q |
20 |
taactatttcaggtcataagtttttgggatgcgcatctccttgtggtgttttgataactagtttgaaatatatcaatgcactatctagagaagttgaata |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||| |||||||||| || | ||| |||||||||| |||| |
|
|
| T |
44683434 |
taactatttcaggtcacaagtttttgggatgcccatctccttgcggtgttgtgataactcgtttgaaatacatgagtgcgatatctagagatgttggcat |
44683335 |
T |
|
| Q |
120 |
tattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcgag |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||| || |
|
|
| T |
44683334 |
cattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaa |
44683235 |
T |
|
| Q |
220 |
aatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttg |
319 |
Q |
| |
|
||||| || |||||||| |||| ||| |||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
44683234 |
aatgaggtgcatgaatgtataatgaaagcacattatttactaaatctactacgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttg |
44683135 |
T |
|
| Q |
320 |
tttttgagagaccctttgatgatcactttaatcgtagatggaatttagcaagcaatggaaatattgcacatgtggtagtgtt |
401 |
Q |
| |
|
| |||||||| ||| | |||||| |||| |||||||| |||||||| ||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
44683134 |
tatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcatgcagtgggaatattgcacatgtggtagtgtt |
44683053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 44640450 - 44640141
Alignment:
| Q |
19 |
ataactatttcaggtcataagtttttgggatgcgcatctccttgtggtgttttgataactagtttgaaatatatcaatgcactatctagagaagttgaat |
118 |
Q |
| |
|
|||||||| || || ||||||||| ||||||| || ||||||||||||||| ||||| |||| || ||||||| | ||| || ||| |||||| |
|
|
| T |
44640450 |
ataactatctctggccataagtttctgggatgtccaattccttgtggtgttttattaactcgtttagaacatatcaacactttatgtaaagatgttgaag |
44640351 |
T |
|
| Q |
119 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcga |
218 |
Q |
| |
|
|||| ||| |||||| | ||||| | ||||| || ||||| |||||||||||||| |||||||||||| | | ||| | ||||||||| | |
|
|
| T |
44640350 |
tgattggttctagggataccacaattagtggtagtcgaagtggtcatgctccaatctttctttggtatgctttgcaaaaaagaggtatcataggactcca |
44640251 |
T |
|
| Q |
219 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
318 |
Q |
| |
|
|||||||| ||| ||||||| | ||||||||||||||| | | | |||| |||||||||||||||||| |||||||||| || |||||||||| |||| |
|
|
| T |
44640250 |
aaatgaagtgcataaatgcatgatgaatgcacgttacttgcaacgtaaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagtt |
44640151 |
T |
|
| Q |
319 |
gtttttgaga |
328 |
Q |
| |
|
|||||||||| |
|
|
| T |
44640150 |
gtttttgaga |
44640141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 44668763 - 44668454
Alignment:
| Q |
19 |
ataactatttcaggtcataagtttttgggatgcgcatctccttgtggtgttttgataactagtttgaaatatatcaatgcactatctagagaagttgaat |
118 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||| |||| || ||||||| | ||| || ||| |||||| |
|
|
| T |
44668763 |
ataaccatttcaggccataagtttttgggatgtccaattccttgtggtgttttattaactcgtttagaacatatcaacactttatgtaaagatgttgaag |
44668664 |
T |
|
| Q |
119 |
atattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctccaatcttactttggtatgctctcnnnnnnnggggtttaataggactcga |
218 |
Q |
| |
|
|||| ||| |||||| | ||||| | ||||| || ||||| |||||| ||||||| ||||||||||| | ||||||| |||| || || |
|
|
| T |
44668663 |
tgattggttctagggataccacaattagtggtagtcgaagtggacatgcttcaatctttatttggtatgctttgcaaaaaaagggtttattagggcttga |
44668564 |
T |
|
| Q |
219 |
gaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaactacgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagtt |
318 |
Q |
| |
|
||||||||| ||| | ||||||| ||||||| ||||| || || |||| || |||||||| ||| | ||||||| || || | |||||| | |||| |
|
|
| T |
44668563 |
gaatgaagtgcataagtgcataatgaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagtt |
44668464 |
T |
|
| Q |
319 |
gtttttgaga |
328 |
Q |
| |
|
|||||||||| |
|
|
| T |
44668463 |
gtttttgaga |
44668454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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