View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16035_low_1 (Length: 820)
Name: NF16035_low_1
Description: NF16035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16035_low_1 |
 | |
|
| [»] scaffold0198 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 211 - 601
Target Start/End: Original strand, 14959177 - 14959569
Alignment:
| Q |
211 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccattcaaataccattaaaatgaaaataaatca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| | |
|
|
| T |
14959177 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaataccattaaaatgaaaatcaatta |
14959276 |
T |
|
| Q |
311 |
gtgcatattcaaaaggtaactttctatcatatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaacttacactctttcagac |
410 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14959277 |
ctgcatattcaaaaggtaaccttctatcacatattcatttttattttgtccctcctgcaacaaccttagttgccaaccccaaacttacactctttcagac |
14959376 |
T |
|
| Q |
411 |
gaacaaaaatgcataatcattttaatca--nnnnnnnnnnnnnnnnnacggtcaaccatgattatcattactcaaacctctttcctattgcaatggagag |
508 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
14959377 |
gaacaaaaatgcataatcattttaaccatttttttttaattttttttacggtaaaccatgattatcattacccaaacatgtttcctattgcaatggagag |
14959476 |
T |
|
| Q |
509 |
tggctgaagcatctagttttatctattggttnnnnnnntgcaattcgtgtatttctcgtgaaaatattttcttgagattaagcattttccaaa |
601 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14959477 |
tggctgaagcatctagttttgtctattggttaaaaaaatgcaattcgtgtatttctcgtgaaaatattttcgtgagattaagcattttccaaa |
14959569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 211 - 598
Target Start/End: Original strand, 39491082 - 39491473
Alignment:
| Q |
211 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccattcaaataccattaaaatgaaaataaatca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
39491082 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaatatcattaaaatgaaaatcaatca |
39491181 |
T |
|
| Q |
311 |
gtgcatattcaaaaggtaactttctatcatatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaacttacactctttcagac |
410 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
39491182 |
ctgcatattcaaaaggtaaccttctatcacatattcacttttattttgtccctcctgcaacaaccttagttgccaaccccaaacttacattctttcagac |
39491281 |
T |
|
| Q |
411 |
gaacaaaaatgcataatcattttaa----tcannnnnnnnnnnnnnnnnacggtcaaccatgattatcattactcaaacctctttcctattgcaatggag |
506 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
39491282 |
gaacaaaaatgcataatcattttaaccttttattttattttttttttttacggtcaaccataattatcattacccaaacctgtttcctattgcaatggag |
39491381 |
T |
|
| Q |
507 |
agtggctgaagcatctagttttatctattggttnnnnnnntgcaattcgtgtatttctcgtgaaaatattttcttgagattaagcattttcc |
598 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
39491382 |
agtggctgaagcatctagttttgtctattggttaaaaaaatgcaattcgtgtatttctcatgaaaatattttcgtgagattaagcattttcc |
39491473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 209 - 596
Target Start/End: Original strand, 2224044 - 2224432
Alignment:
| Q |
209 |
cattgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccattcaaataccattaaaatgaaaataaat |
308 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
2224044 |
cattgctatataccacgattaaatatttcaagaataaatcacgaatcacatatatttcatagtttttgaccattcaaataccattaaaatgaaaatcaat |
2224143 |
T |
|
| Q |
309 |
cagtgcatattcaaaaggtaactttctatcatatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaacttacactctttcag |
408 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2224144 |
cagtgcatattcaaaaggtaaccttctatcacatattcacttttattttgtccctcgtgcaacaaccttacttgccaactccaaacttacactctttcag |
2224243 |
T |
|
| Q |
409 |
acgaacaaaaatgcataatcattttaatca-nnnnnnnnnnnnnnnnnacggtcaaccatgattatcattactcaaacctctttcctattgcaatggaga |
507 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2224244 |
acgaacaaaaatgcataatcattttaaccattttttatttgtttttttacggtcaaccatgattatcattactcaaacctgtttcctattgcaatggaga |
2224343 |
T |
|
| Q |
508 |
gtggctgaagcatctagttttatctattggttnnnnnnntgcaattcgtgtatttctcgtgaaaatattttcttgagattaagcatttt |
596 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
2224344 |
gtggctgaagcatctagttttgtctattggttaaaaaaatgcaatttgtgtatttctcatgaaaatatttttgtgagattaagcatttt |
2224432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 211 - 598
Target Start/End: Complemental strand, 27585595 - 27585205
Alignment:
| Q |
211 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccattcaaataccattaaaatgaaaataaatca |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||| | |
|
|
| T |
27585595 |
ttgctatataccacaattaaatacttcaagaataaatcacgaatcacatatattccatagtttttaaccactcaaatatcattaaaatgaaaatcaatta |
27585496 |
T |
|
| Q |
311 |
gtgcatattcaaaaggtaactttctatcatatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaacttacactctttcagac |
410 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
27585495 |
ctgcatattcaaaaggtaaccttctatcacatattcacttttattttgtccctcctgcaacaaccttagttgccaaccccaaacttacactctttcggac |
27585396 |
T |
|
| Q |
411 |
gaacaaaaatgcataatcattttaatca---nnnnnnnnnnnnnnnnnacggtcaaccatgattatcattactcaaacctctttcctattgcaatggaga |
507 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
27585395 |
gaacaaaaatgcataatcattttaaccattttttttttatttttttttacggtaaaccatgattatcattacccaaacatgtttcctattgcaatggaga |
27585296 |
T |
|
| Q |
508 |
gtggctgaagcatctagttttatctattggttnnnnnnntgcaattcgtgtatttctcgtgaaaatattttcttgagattaagcattttcc |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27585295 |
gtggctgaagcatctagttttatctattggttaaaaaaatgcaattcgtgtatttcttgtgaaaatattttcatgagattaagcattttcc |
27585205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 235; Significance: 1e-129; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 211 - 598
Target Start/End: Original strand, 18420 - 18809
Alignment:
| Q |
211 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccattcaaataccattaaaatgaaaataaatca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| | |
|
|
| T |
18420 |
ttgctatataccacgattaaatacttcaagaataaatcacgaatcacatatatttcatagtttttaaccactcaaataccattaaaatgaaaatcaatta |
18519 |
T |
|
| Q |
311 |
gtgcatattcaaaaggtaactttctatcatatattcacttttattttgtccatcctgcaacaaccttacttgccaaccccaaacttacactctttcagac |
410 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18520 |
ctgcatattcaaaaggtaaccttccatcacatattcacttttattttgtccctcctgcaacaaccttagttgccaaccccaaacttacactctttcagac |
18619 |
T |
|
| Q |
411 |
gaacaaaaatgcataatcattttaatca--nnnnnnnnnnnnnnnnnacggtcaaccatgattatcattactcaaacctctttcctattgcaatggagag |
508 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
18620 |
gaacaaaaatgcataatcattttaaccatttttttttaattttttttacggtaaaccatgattatcattacccaaacatgtttcctattgcaatggagag |
18719 |
T |
|
| Q |
509 |
tggctgaagcatctagttttatctattggttnnnnnnntgcaattcgtgtatttctcgtgaaaatattttcttgagattaagcattttcc |
598 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18720 |
tggctgaagcatctagttttgtctattggttaaaaaaatgcaattcgtgtatttctcgtgaaaatattttcgtgagattaagcattttcc |
18809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 46877681 - 46877883
Alignment:
| Q |
1 |
atacaataattaggcnnnnnnnaatcatgttatcttacccagcaaattaaagcatggtcctgtggcccttttcagcgagatccctgtagtgttagccaaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46877681 |
atacaataattaggctttttttaatcatgttatcttacccagcaaattaaagcatgctcctgtggcccttttcagcgagatccctgtagtgttagccaaa |
46877780 |
T |
|
| Q |
101 |
ttatgtacatatacatagatttggagttattatgcgtttaattcatgcacgaaaaagaatactttgacgtcaaaagctccacttaaaatgataacaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46877781 |
ttatgtacatatacatagatttggagttattatgcgtttaattcatgcacgaaaaagaatactttgacgtcaaaagctccacttaaaatgataacaaaac |
46877880 |
T |
|
| Q |
201 |
aaa |
203 |
Q |
| |
|
||| |
|
|
| T |
46877881 |
aaa |
46877883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 655 - 805
Target Start/End: Original strand, 46877936 - 46878086
Alignment:
| Q |
655 |
ctacacttaatagagatgttgataacgatgttacnnnnnnnnaactcttgatgacgttgcttgtagcaccccaggaatatatatggagtacatgtcattt |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46877936 |
ctacacttaatagagatgttgataacgatgttacttttttttaactcttgatgatgttgcttgtagcaccccaggaatatatatggagtacatgtcattt |
46878035 |
T |
|
| Q |
755 |
ctcatcgccatgtcccattccatcaaattatagctttcacataaagtatta |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46878036 |
ctcatcgccatgtcccattccatcaaattatagctttcacataaagtatta |
46878086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 206 - 370
Target Start/End: Original strand, 35181759 - 35181922
Alignment:
| Q |
206 |
caacattgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccattcaaataccattaaaatgaaaata |
305 |
Q |
| |
|
||||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35181759 |
caacactgctatatatcacgattaaaaactttaagaataaatcacgaattacatatatctcctagtttttaaccattcaaataccattaaaatgaaaatc |
35181858 |
T |
|
| Q |
306 |
aatcagtgcatattcaaaaggtaactttctatcatatattcacttttattttgtccatcctgcaa |
370 |
Q |
| |
|
||||| || |||||||| | ||||| |||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
35181859 |
aatcattgtatattcaata-gtaaccttctatcacatattcacttttattttgtccctcatgcaa |
35181922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 456 - 595
Target Start/End: Original strand, 35182010 - 35182149
Alignment:
| Q |
456 |
acggtcaaccatgattatcattactcaaacctctttcctattgcaatggagagtggctgaagcatctagtttta-tctattggttnnnnnnntgcaattc |
554 |
Q |
| |
|
||||| |||||| ||||||||||| ||||| | || |||||| |||||||||||||||||||||||| ||||| |||| || |||||||| |
|
|
| T |
35182010 |
acggtaaaccataattatcattacccaaacatattccctattacaatggagagtggctgaagcatcttgtttttgtctagtgac-aataaaatgcaattc |
35182108 |
T |
|
| Q |
555 |
gtgtatttctcgtgaaaatattttcttgagattaagcattt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35182109 |
gtgtatttctcgtgaaaatattttcttgagattaagcattt |
35182149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 1249511 - 1249580
Alignment:
| Q |
212 |
tgctatataccacgattaaatacttcaagaataaatcacgaatcacatatattctatagtttttaaccat |
281 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
1249511 |
tgctatatatcacgattaaatactttacgaataaatcatgaatcacatatattccatagttgttaaccat |
1249580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 462 - 522
Target Start/End: Original strand, 1249850 - 1249910
Alignment:
| Q |
462 |
aaccatgattatcattactcaaacctctttcctattgcaatggagagtggctgaagcatct |
522 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||| ||||||||| |||| |||| |
|
|
| T |
1249850 |
aaccatgattatcattatccaaacatttttcctattgcaatcgagagtggccgaagaatct |
1249910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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