View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16035_low_2 (Length: 310)
Name: NF16035_low_2
Description: NF16035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16035_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 133 - 302
Target Start/End: Original strand, 579160 - 579329
Alignment:
| Q |
133 |
cacagtcaatccaattctgttcaaattcctcaacacaattggttgaagcatgttaattctcacaataatttctcctcccaaccgcagtttctcacttcca |
232 |
Q |
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| T |
579160 |
cacagtcaatccaattctgttcaaattcctcaacacaattggttgaagcatgttaattctcacaataatttctcctcccaaccgcagtttctcacttcca |
579259 |
T |
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| Q |
233 |
atttcgtcttttctcttccaactaacaaaccaatcgacagagccgctactaccacgtatgttacgccttt |
302 |
Q |
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| T |
579260 |
atttcctctttactcttccaactaacaaaccaatcgacagagctgctactaccacgtatgttacgccttt |
579329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 579084 - 579118
Alignment:
| Q |
57 |
caacggtaatccttctttattctctcactcaatca |
91 |
Q |
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| T |
579084 |
caacggtaatccttctttattctctcactcaatca |
579118 |
T |
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