View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16035_low_5 (Length: 229)
Name: NF16035_low_5
Description: NF16035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16035_low_5 |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4927 - 4699
Alignment:
| Q |
1 |
gttaggtcttcaaaataagcaggatgacgaagttgacatgttaaaacttgagggtttatataatgaagctaatgctggggtacaacatgatggaggttac |
100 |
Q |
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| T |
4927 |
gttaggtcttcaaaataagcaggatgacgaagttgacatgttaaaacttgagggtttatataatgaagctaatgctggggtacaacatgatggaggttac |
4828 |
T |
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| Q |
101 |
cagataggccaagtgaattccaacccttttgattttcagactattcatgatcctacacaatataacatgacattggaagtacccccaaatgtcttttgtg |
200 |
Q |
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| T |
4827 |
cagataggccaagtgaattccaacccttttgattttcagactattcatgatcctacacaatataacatggcattggaagtacccccaaatgtcttttgtg |
4728 |
T |
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| Q |
201 |
ttcaccctaacattccaccccaatttgta |
229 |
Q |
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||| ||||||||| ||||||||||||||| |
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| T |
4727 |
ttccccctaacataccaccccaatttgta |
4699 |
T |
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