View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16036_high_1 (Length: 714)

Name: NF16036_high_1
Description: NF16036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16036_high_1
NF16036_high_1
[»] chr1 (2 HSPs)
chr1 (1-424)||(32711418-32711841)
chr1 (491-640)||(32711910-32712057)
[»] chr7 (4 HSPs)
chr7 (311-415)||(41664884-41664988)
chr7 (308-422)||(5617899-5618013)
chr7 (371-430)||(37701298-37701357)
chr7 (371-422)||(21311759-21311810)
[»] chr4 (4 HSPs)
chr4 (308-422)||(32430551-32430665)
chr4 (316-363)||(9912349-9912396)
chr4 (337-422)||(4873104-4873188)
chr4 (385-422)||(46702031-46702068)
[»] chr5 (4 HSPs)
chr5 (318-422)||(30513860-30513964)
chr5 (318-422)||(30554200-30554304)
chr5 (387-422)||(6706324-6706359)
chr5 (331-404)||(5506920-5506993)
[»] chr3 (1 HSPs)
chr3 (347-422)||(31070668-31070743)
[»] scaffold0197 (1 HSPs)
scaffold0197 (371-422)||(26023-26074)
[»] chr6 (1 HSPs)
chr6 (318-403)||(16126469-16126554)
[»] chr8 (1 HSPs)
chr8 (309-363)||(9106738-9106792)
[»] chr2 (1 HSPs)
chr2 (368-422)||(12232343-12232397)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 32711418 - 32711841
Alignment:
Q  1 tgttgttttctttctttcatttctaatgatttctctttaattatgtaaaatgagtag-attcacacaattattgttccatgaaattccctgcttgttaat 99  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32711418 tgttgttttctttctttcatttctaatg-tttctctttaattatgtaaaatgagtagtattcacacaattattgttccatgaaattccctgcttgttaat 32711516  T
Q  100 ggtaatttacggattggagtggggaccagnnnnnnnnnnnnaacttactactgtaaaagaatggcttaatttcttgaagtctgctttgaataagttgccg 199  Q
    |||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32711517 ggtaatttacggattggagtggggaccagtgtttttttt--aacttactactgtaaaagaatggcttaatttcttgaagtctgctttgaataagttgccg 32711614  T
Q  200 taccttgcactttcatgcttctattttggtggcgttaagtttgcggaaaagtagtttgtgaagaacgtgataattgggcctacaag--tatttttctagg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  32711615 taccttgcactttcatgcttctattttggtggcgttaagtttgcagaaaagtagtttgtgaagaacgtgataattgggcctacaagtatatttttctagg 32711714  T
Q  298 aaacatgtacatggttgcttttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttag 397  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||| ||||||||    
T  32711715 aaacatgtaaatggttgcttttctgacattaaatgttttctaaaaacacatgaaaaagattaaaaatttcagcggtaattaattaccgtcagttttttag 32711814  T
Q  398 ttataagtcaacggtagttaactacaa 424  Q
    ||||||||||||| |||||||||||||    
T  32711815 ttataagtcaacgatagttaactacaa 32711841  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 491 - 640
Target Start/End: Original strand, 32711910 - 32712057
Alignment:
Q  491 catggatgcagctttgaatttacaccttcaaggttttcaaacatgtcaatttcttatcgcatcatactctctcttctcaaacatcttgatgcattttgga 590  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32711910 catggatgcagctttgaatttac--cttcaaggttttcaaacatgtcaatttcttatggcatcatactctctcttctcaaacatcttgatgcattttgga 32712007  T
Q  591 ttttagctcccaaaaacataatatgtgttcaaaactcccgtttggtgcac 640  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  32712008 ttttagctcccaaaaacataatatatgttcaaaactctcgtttggtgcac 32712057  T

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Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 311 - 415
Target Start/End: Original strand, 41664884 - 41664988
Alignment:
Q  311 gttgcttttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtcaacg 410  Q
    ||||||||||||  | ||||||||||||||||||| || |||||||||||||| |||||||||| ||||||| |||| ||||| |||||||||||| |||    
T  41664884 gttgcttttctgcaactgaatgttttctaaaaacacataaaaaagattaaaaagtttagtggtagttaattatcgtcgattttatagttataagtcgacg 41664983  T
Q  411 gtagt 415  Q
    |||||    
T  41664984 gtagt 41664988  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 308 - 422
Target Start/End: Complemental strand, 5618013 - 5617899
Alignment:
Q  308 atggttgcttttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtca 407  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||    || |||| |||||||||| |  |||| |||||||||| ||    
T  5618013 atggttgcttttctgacattgaatgtttcctagaaacacatgaaaaagactaaaaagcccagcggtagttaattaccgccggttttctagttataagcca 5617914  T
Q  408 acggtagttaactac 422  Q
     ||||||||||||||    
T  5617913 gcggtagttaactac 5617899  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 37701357 - 37701298
Alignment:
Q  371 ggtaattaattaccgtcaattttttagttataagtcaacggtagttaactacaactgaag 430  Q
    |||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  37701357 ggtagttaactaccgtcgattttttagttataagtcagcggtagttaactacaaccgaag 37701298  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 21311810 - 21311759
Alignment:
Q  371 ggtaattaattaccgtcaattttttagttataagtcaacggtagttaactac 422  Q
    |||| |||||||||||||||||| |||||||||| || ||||||||||||||    
T  21311810 ggtagttaattaccgtcaattttctagttataagccagcggtagttaactac 21311759  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 308 - 422
Target Start/End: Complemental strand, 32430665 - 32430551
Alignment:
Q  308 atggttgcttttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtca 407  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||| || || |||| |||| ||||| | ||||| ||||||||||||     
T  32430665 atggttgcttttctgacattgaatgtttcctataaacacatgaaaaagactaaaaagttcagcggtagttaactaccgccgattttctagttataagtct 32430566  T
Q  408 acggtagttaactac 422  Q
      |||||||||||||    
T  32430565 gtggtagttaactac 32430551  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 9912396 - 9912349
Alignment:
Q  316 ttttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaa 363  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  9912396 ttttttgacattgaatgtttcctagaaacatatgaaaaagattaaaaa 9912349  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 4873188 - 4873104
Alignment:
Q  337 ctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtcaacggtagttaactac 422  Q
    ||||||||| ||||||| || |||||||   ||||||| |||| |||| ||| |||| ||||||||||||| ||||||||||||||    
T  4873188 ctaaaaacacatgaaaatgactaaaaaccc-agtggtagttaactaccatcagttttctagttataagtcagcggtagttaactac 4873104  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 46702068 - 46702031
Alignment:
Q  385 gtcaattttttagttataagtcaacggtagttaactac 422  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  46702068 gtcaatttttaagttataagtcagcggtagttaactac 46702031  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 318 - 422
Target Start/End: Complemental strand, 30513964 - 30513860
Alignment:
Q  318 ttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtcaacggtagtta 417  Q
    |||||||||||||| ||||||| ||||| |||||||||| ||||||    || |||| |||| |||||||| |||| ||||||||||||| |||||||||    
T  30513964 ttctgacattgaatattttctagaaacacatgaaaaagactaaaaagcccagcggtagttaactaccgtcagttttctagttataagtcagcggtagtta 30513865  T
Q  418 actac 422  Q
    |||||    
T  30513864 actac 30513860  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 318 - 422
Target Start/End: Complemental strand, 30554304 - 30554200
Alignment:
Q  318 ttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtcaacggtagtta 417  Q
    |||||||||||||| ||||||| ||||| |||||||||| ||||||    || |||| |||| |||||||| |||| ||||||||||||| |||||||||    
T  30554304 ttctgacattgaatattttctagaaacacatgaaaaagactaaaaagcccagcggtagttaactaccgtcagttttctagttataagtcagcggtagtta 30554205  T
Q  418 actac 422  Q
    |||||    
T  30554204 actac 30554200  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 387 - 422
Target Start/End: Complemental strand, 6706359 - 6706324
Alignment:
Q  387 caattttttagttataagtcaacggtagttaactac 422  Q
    ||||||||||||||||||||||||||||||||||||    
T  6706359 caattttttagttataagtcaacggtagttaactac 6706324  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 5506993 - 5506920
Alignment:
Q  331 tgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataag 404  Q
    |||||| || |||||  |||||| ||||||||| || |||||||||||| ||||| | ||||| ||||||||||    
T  5506993 tgttttttagaaacacgtgaaaatgattaaaaaattcagtggtaattaactaccgccgattttctagttataag 5506920  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 31070743 - 31070668
Alignment:
Q  347 atgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataagtcaacggtagttaactac 422  Q
    ||||||| ||||||||| || || |||| |||||||||||||||||| ||||||||||||  ||||||||||||||    
T  31070743 atgaaaatgattaaaaaattcagcggtagttaattaccgtcaattttctagttataagtcggcggtagttaactac 31070668  T

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Target: scaffold0197 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 26074 - 26023
Alignment:
Q  371 ggtaattaattaccgtcaattttttagttataagtcaacggtagttaactac 422  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  26074 ggtagttaattaccgtcaattttctagttataagtcagcggtagttaactac 26023  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 16126469 - 16126554
Alignment:
Q  318 ttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaactttagtggtaattaattaccgtcaattttttagttataa 403  Q
    |||||||||||||||||| ||||||||| || |||||||||||||| || || |||| |||| | |||||| |||| ||| |||||    
T  16126469 ttctgacattgaatgtttcctaaaaacacataaaaaagattaaaaaattcagcggtagttaactgccgtcagttttctaggtataa 16126554  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 9106738 - 9106792
Alignment:
Q  309 tggttgcttttctgacattgaatgttttctaaaaacatatgaaaaagattaaaaa 363  Q
    |||||| | |||||||||||||||||||| | ||||| |||||||||||||||||    
T  9106738 tggttgttgttctgacattgaatgttttccagaaacacatgaaaaagattaaaaa 9106792  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 12232397 - 12232343
Alignment:
Q  368 agtggtaattaattaccgtcaattttttagttataagtcaacggtagttaactac 422  Q
    ||||||| |||| ||||||| ||||||||||||||||||| || |||||||||||    
T  12232397 agtggtagttaactaccgtcgattttttagttataagtcagcgatagttaactac 12232343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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