View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16036_low_3 (Length: 280)
Name: NF16036_low_3
Description: NF16036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16036_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 43314570 - 43314305
Alignment:
| Q |
1 |
tgaacgagcagaacctgtgaagagtccatttaaggtacttctaaagaggaagtacaggccacaactgataataggggcgttagggattccagcattccaa |
100 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43314570 |
tgaactagcacaagctgtgaagagtccatttaaggtacttctaaagaggaagtacaggccacaactgataataggggcgttagggattccagcattccaa |
43314471 |
T |
|
| Q |
101 |
cagttaacaggaaataactccattctcttctatgcacctgtcatcttccagagtttagggtttggatctaatgcagctcttttctcatcttttattacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43314470 |
cagttaacaggaaataactccattctcttctatgcacctgtcatcttccagagtttagggtttggatctaatgcagctcttttctcatcttttattacca |
43314371 |
T |
|
| Q |
201 |
atggagctctccttgttgctactgtcatttcaatgtttttggttgacaagtttggcagaagaaagt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43314370 |
atggagctctccttgttgctactgtcatttcaatgtttttggttgacaagtttggcagaagaaagt |
43314305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 43380352 - 43380408
Alignment:
| Q |
86 |
attccagcattccaacagttaacaggaaataactccattctcttctatgcacctgtc |
142 |
Q |
| |
|
||||| ||||||||||| | || ||||| |||||||| |||||||||||||||||| |
|
|
| T |
43380352 |
attcctgcattccaacaactgactggaaacaactccatcctcttctatgcacctgtc |
43380408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University