View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16037_high_1 (Length: 547)
Name: NF16037_high_1
Description: NF16037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16037_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 45556699 - 45556272
Alignment:
| Q |
16 |
caattggatcttaacgattttatcgctggaaggacgaaatgattttaaacgcagcatttcgttctacgaaataagtgattgtgaagaaaattgattctag |
115 |
Q |
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| T |
45556699 |
caattggatcttaacgattttatcgctggaaggacgaaatgcttttaaacgcagcatttcgttctacgaaataagtgattgtgaagaaaattgattctag |
45556600 |
T |
|
| Q |
116 |
aa-ttgttgagatcggaatcgcggtttcagattctgttcaaatctggtgaaaattcacactccgtttagatttgagaaatgcaccttaacggaacggagt |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45556599 |
aagttgttgagatcggaatcgcggtttcagattctgttcaaatctggtgaaaattcacactccgtttagatttgagaaatgcaccttaacggaacggagt |
45556500 |
T |
|
| Q |
215 |
tataaatcgcttccgtctacaacaaccatgctctttagtacttatgtatctcgttttctgagtaaccaaacggagaataagcataaacttgctctgtgaa |
314 |
Q |
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| T |
45556499 |
tataaatctcttccgtctacaacaaccatgctctttagtacttatgtatctcgttttctgagtaaccaaacggagaataagcataaacttgctctgtgaa |
45556400 |
T |
|
| Q |
315 |
gtacttatgagattattcgaaacaataagtacttatgagatataactttggaggattgaattgtggtttgagtgtgattgtgcttttggtgaagtaaaat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45556399 |
gtacttatgagattattcgaaacaataagtacttatgagatataactttggaggattgaattgtggtttgagtgtgattgtgcttttggtgaagtaaaat |
45556300 |
T |
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| Q |
415 |
ggagatcaatgatctatgcttcaaacta |
442 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45556299 |
ggagatcaatgatctatgcttcaaacta |
45556272 |
T |
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