View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16037_low_3 (Length: 302)
Name: NF16037_low_3
Description: NF16037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16037_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 49159718 - 49159548
Alignment:
| Q |
22 |
aacatgtaattatggttgtttcatgaagcatcggttattttgattaaaataacaataaaaggaataaagtattgatgtgaggtaaatttgtgggactcaa |
121 |
Q |
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| T |
49159718 |
aacatgtaattatggttgtttcatgaagcatcggttattttgattaaaataacaataaaaggaataaagtattgatgtgaggtaaatttgtgggactcaa |
49159619 |
T |
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| Q |
122 |
tatgagtattttatagatcatcattggagtaaaaaatagaagagttgtttcaagataatttggcacaatat |
192 |
Q |
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| T |
49159618 |
tatgagtattttatagatcatcattggaataaaaaatagaagagttgtttcaagatgatttgacacaatat |
49159548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 49159494 - 49159409
Alignment:
| Q |
199 |
caaaataacaatggatagtgttcaccattgaaggtggtttaaggtaccgtttgaaaaataattagtagtattgtgcgtgccatttg |
284 |
Q |
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| T |
49159494 |
caaaataacaatggatagtgttcaccgttgaaggtggtttaaggtaccgtttgaaaaataattagtagtattgtgcgtgccatttg |
49159409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 5335237 - 5335022
Alignment:
| Q |
24 |
catgtaattatggttgtttcatgaagcatcggttattttgattaaaataacaataa---aaggaataaagtattgatgt--gaggtaaatttgtgggact |
118 |
Q |
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| T |
5335237 |
catgtaatagtggttgcttcatgaagcaatagttcttttgattaaaataacaacaacagaaggaataaagcattaatgtttgaagtaaatttgtgggacc |
5335138 |
T |
|
| Q |
119 |
caatatgagtattttatagatcatcattggagtaaaaaatagaagagttgtttcaagataatttggcacaatatgaccttcaaaataacaatggatagtg |
218 |
Q |
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| T |
5335137 |
taacatgagtattttatagatcaccattggagtgaaaaatagaggagttactttaagatgatttggcacaatggaacccacaaaataacaatgaatggag |
5335038 |
T |
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| Q |
219 |
ttcaccattgaaggtg |
234 |
Q |
| |
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|||||||||| ||||| |
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| T |
5335037 |
ttcaccattggaggtg |
5335022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 45737207 - 45737111
Alignment:
| Q |
48 |
agcatcggttattttgattaaaataacaataaaaggaataaagtattgatgtg--aggtaaatttgtgggactcaatatgagtattttatagatcat |
142 |
Q |
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| T |
45737207 |
agcaacggttattctaattaaaaaaacaatagaaggactaaagtattaatgtgtgaggtaaatttatgggactcaatataattattttatagatcat |
45737111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 7664612 - 7664425
Alignment:
| Q |
24 |
catgtaattatggttgtttcatgaagcatcggttattttgattaaaataacaataaaaggaataaagtattgatg--tgaggtaaatttgtgggactca- |
120 |
Q |
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|||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||| | | ||| |
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| T |
7664612 |
catgtatttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtagca-tcag |
7664514 |
T |
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| Q |
121 |
atatgagtattttatagatcatcattggagtaaaaaatagaagagttgtttcaagataatttggcacaatatgaccttcaaaataacaa |
209 |
Q |
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| ||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||| |||||| |||||| |||| ||||||||||| |
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| T |
7664513 |
acatgagtattttatagatcaccattgaagtaaaaaatagaggagttgcttcaagattatttggtacaataagacccacaaaataacaa |
7664425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 17434298 - 17434370
Alignment:
| Q |
120 |
aatatgagtattttatagatcatcattggagtaaaaaatagaagagttgtttcaagataatttggcacaatat |
192 |
Q |
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||||||||| ||||| || ||||||||||||||||||| | ||||| ||||||||| |||||||| ||||| |
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| T |
17434298 |
aatatgagttttttagagttcatcattggagtaaaaaacgcatgagttatttcaagatgatttggcataatat |
17434370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 34374756 - 34374601
Alignment:
| Q |
78 |
aaaaggaataaagtattgatgtg--aggtaaatttgtgggactcaatatgagtattttatagatcatcattggagtaaaaaatagaagagttgtttcaag |
175 |
Q |
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|||||||| |||||||| ||||| |||||||||||||| || |||||||||| |||| |||||| |||||||||||| |||| | ||| || |||||| |
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| T |
34374756 |
aaaaggaacaaagtattaatgtgtgaggtaaatttgtggaaccaaatatgagtaatttaaagatcaccattggagtaaataatataggagatgcttcaag |
34374657 |
T |
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| Q |
176 |
ataatttggcacaatatgaccttcaaaataacaatggatagtgttcaccattgaag |
231 |
Q |
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| T |
34374656 |
atgatttggtacaatatgacccacaaaataacagtgggtagagttcaccattgaag |
34374601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 3311219 - 3311357
Alignment:
| Q |
96 |
atgtgaggtaaatttgtgggactcaatatgagtattttatagatcatcattggagtaaaaaatagaagagttgtttcaagataatttggcacaatatgac |
195 |
Q |
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||||| |||||| ||||||||| ||| |||||||||||| || | | ||||| |||||||||| || |||| ||| |||||| || ||||| |||| | | |
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| T |
3311219 |
atgtgtggtaaaattgtgggacccaagatgagtattttaaagtttaccattgaagtaaaaaattgatgagtagttacaagattatgtggcataatagggc |
3311318 |
T |
|
| Q |
196 |
cttcaaaataacaatggatagtgttcaccattgaaggtg |
234 |
Q |
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| T |
3311319 |
cctcaaaataatcatggatagagttcaccattgaaggtg |
3311357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 26454009 - 26454077
Alignment:
| Q |
103 |
gtaaatttgtgggactcaatatgagtattttatagatcatcattggagtaaaaaatagaagagttgttt |
171 |
Q |
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||||| ||||||||| ||||||||| |||| || ||| ||||||||||||||||| | ||||||||| |
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| T |
26454009 |
gtaaagttgtgggacctaatatgagttgtttagagttcaccattggagtaaaaaataaatgagttgttt |
26454077 |
T |
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