View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16038_high_1 (Length: 561)

Name: NF16038_high_1
Description: NF16038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16038_high_1
NF16038_high_1
[»] chr1 (23 HSPs)
chr1 (4-546)||(29099536-29100070)
chr1 (1-172)||(15495877-15496048)
chr1 (1-172)||(14351048-14351218)
chr1 (291-406)||(19258742-19258857)
chr1 (289-408)||(2509028-2509147)
chr1 (289-408)||(34307206-34307325)
chr1 (1-80)||(11814700-11814779)
chr1 (289-408)||(39249931-39250050)
chr1 (289-408)||(46901803-46901922)
chr1 (5-111)||(2077418-2077523)
chr1 (72-164)||(26842000-26842092)
chr1 (1-80)||(26842049-26842127)
chr1 (324-406)||(28647392-28647474)
chr1 (1-64)||(8039197-8039259)
chr1 (116-175)||(10494882-10494941)
chr1 (100-171)||(26236753-26236824)
chr1 (290-368)||(10146971-10147049)
chr1 (1-83)||(615641-615723)
chr1 (1-82)||(34654839-34654920)
chr1 (132-172)||(2077379-2077419)
chr1 (342-406)||(8848923-8848987)
chr1 (333-408)||(9642933-9643009)
chr1 (1-45)||(39709190-39709234)
[»] chr2 (24 HSPs)
chr2 (1-174)||(6705509-6705682)
chr2 (32-175)||(40900224-40900367)
chr2 (291-404)||(37914308-37914421)
chr2 (289-404)||(36315565-36315680)
chr2 (289-408)||(44958117-44958236)
chr2 (289-408)||(33732573-33732692)
chr2 (20-175)||(38531278-38531433)
chr2 (1-127)||(14950753-14950879)
chr2 (289-408)||(37498931-37499052)
chr2 (290-408)||(3830965-3831081)
chr2 (289-408)||(14572999-14573118)
chr2 (333-408)||(24137160-24137235)
chr2 (1-111)||(9910631-9910740)
chr2 (291-408)||(6376306-6376418)
chr2 (21-122)||(28164837-28164938)
chr2 (289-408)||(16089826-16089944)
chr2 (340-408)||(41188824-41188892)
chr2 (1-83)||(4869516-4869598)
chr2 (1-172)||(1551698-1551859)
chr2 (94-170)||(3921536-3921612)
chr2 (1-171)||(17282046-17282206)
chr2 (18-64)||(27888778-27888824)
chr2 (94-167)||(34660230-34660303)
chr2 (91-171)||(1895351-1895431)
[»] chr5 (31 HSPs)
chr5 (1-171)||(40680874-40681044)
chr5 (1-172)||(26331090-26331261)
chr5 (289-408)||(1815684-1815803)
chr5 (289-408)||(40888010-40888129)
chr5 (289-408)||(9408107-9408226)
chr5 (289-408)||(39370931-39371050)
chr5 (8-122)||(12156370-12156484)
chr5 (291-408)||(2237282-2237399)
chr5 (320-408)||(17225352-17225440)
chr5 (289-406)||(4300613-4300730)
chr5 (1-150)||(24867100-24867249)
chr5 (1-112)||(34574162-34574272)
chr5 (300-406)||(14831559-14831665)
chr5 (1-83)||(27170243-27170325)
chr5 (291-408)||(13347134-13347251)
chr5 (10-111)||(42268836-42268936)
chr5 (289-381)||(33404531-33404623)
chr5 (294-408)||(41003918-41004031)
chr5 (289-408)||(27553441-27553560)
chr5 (323-408)||(31800596-31800681)
chr5 (1-64)||(40599972-40600035)
chr5 (289-373)||(12164255-12164339)
chr5 (291-374)||(19596169-19596252)
chr5 (1-163)||(26656639-26656790)
chr5 (1-163)||(26928226-26928377)
chr5 (2-76)||(7271718-7271792)
chr5 (19-83)||(6030500-6030564)
chr5 (104-167)||(7271788-7271851)
chr5 (289-408)||(19124540-19124657)
chr5 (1-163)||(41355620-41355772)
chr5 (1-55)||(42221396-42221450)
[»] chr4 (25 HSPs)
chr4 (1-171)||(45873110-45873280)
chr4 (5-172)||(55728704-55728871)
chr4 (289-404)||(45829329-45829444)
chr4 (289-404)||(46192363-46192478)
chr4 (7-122)||(42677627-42677742)
chr4 (1-112)||(12130522-12130633)
chr4 (289-408)||(44275710-44275829)
chr4 (1-170)||(38093223-38093393)
chr4 (289-408)||(3672278-3672397)
chr4 (289-408)||(6112634-6112753)
chr4 (289-408)||(7217769-7217888)
chr4 (289-408)||(28093164-28093283)
chr4 (289-408)||(49243819-49243938)
chr4 (289-408)||(21391023-21391142)
chr4 (289-408)||(35544916-35545035)
chr4 (333-408)||(51038811-51038887)
chr4 (1-52)||(14441123-14441174)
chr4 (1-171)||(47518552-47518712)
chr4 (1-83)||(34227172-34227254)
chr4 (94-167)||(23054338-23054411)
chr4 (20-164)||(24957685-24957819)
chr4 (289-329)||(43245522-43245562)
chr4 (290-406)||(54849793-54849909)
chr4 (1-126)||(53202127-53202241)
chr4 (1-73)||(12489182-12489254)
[»] chr7 (28 HSPs)
chr7 (291-408)||(23980137-23980254)
chr7 (5-176)||(21590510-21590682)
chr7 (291-408)||(5811231-5811348)
chr7 (289-408)||(7699951-7700070)
chr7 (289-408)||(7700149-7700268)
chr7 (289-408)||(7700347-7700466)
chr7 (289-408)||(7700545-7700664)
chr7 (289-408)||(42221031-42221150)
chr7 (291-408)||(13108154-13108270)
chr7 (1-122)||(31039008-31039129)
chr7 (291-408)||(31148296-31148413)
chr7 (289-408)||(28307563-28307682)
chr7 (289-408)||(36346633-36346751)
chr7 (289-408)||(21807390-21807509)
chr7 (289-408)||(26972271-26972390)
chr7 (289-408)||(34108430-34108549)
chr7 (289-411)||(30887704-30887826)
chr7 (10-116)||(24718022-24718127)
chr7 (323-408)||(20086696-20086781)
chr7 (336-408)||(46475075-46475147)
chr7 (289-408)||(45782728-45782847)
chr7 (333-408)||(34828113-34828188)
chr7 (290-408)||(38321014-38321132)
chr7 (1-83)||(3302436-3302518)
chr7 (291-408)||(15020288-15020402)
chr7 (5-111)||(43047689-43047794)
chr7 (333-376)||(42950113-42950156)
chr7 (3-59)||(36582839-36582894)
[»] chr6 (11 HSPs)
chr6 (291-408)||(14022940-14023057)
chr6 (291-408)||(24208450-24208567)
chr6 (289-408)||(3986973-3987092)
chr6 (1-120)||(32747641-32747760)
chr6 (289-408)||(13697573-13697691)
chr6 (289-408)||(3118115-3118234)
chr6 (289-408)||(15345727-15345844)
chr6 (30-109)||(30845463-30845542)
chr6 (1-59)||(9566804-9566861)
chr6 (1-57)||(11366700-11366755)
chr6 (94-162)||(21881411-21881479)
[»] chr8 (23 HSPs)
chr8 (289-408)||(30432343-30432462)
chr8 (289-408)||(12665348-12665468)
chr8 (1-83)||(15050124-15050206)
chr8 (289-408)||(42162602-42162721)
chr8 (289-408)||(44081784-44081903)
chr8 (291-408)||(33726017-33726135)
chr8 (1-122)||(25142910-25143031)
chr8 (289-406)||(36189220-36189337)
chr8 (333-408)||(31318853-31318928)
chr8 (289-408)||(10203668-10203787)
chr8 (3-73)||(23635861-23635931)
chr8 (72-172)||(15050070-15050170)
chr8 (289-408)||(18184557-18184676)
chr8 (289-408)||(43186031-43186150)
chr8 (10-79)||(5515298-5515367)
chr8 (333-408)||(38845091-38845165)
chr8 (3-83)||(10408713-10408793)
chr8 (301-376)||(31547-31622)
chr8 (1-83)||(5994493-5994575)
chr8 (29-172)||(6443925-6444057)
chr8 (6-54)||(23635816-23635864)
chr8 (306-408)||(42668850-42668951)
chr8 (1-42)||(3763043-3763084)
[»] chr3 (22 HSPs)
chr3 (289-408)||(46112012-46112131)
chr3 (289-408)||(21559565-21559684)
chr3 (289-408)||(36749410-36749529)
chr3 (291-408)||(39467169-39467286)
chr3 (289-408)||(34749966-34750085)
chr3 (289-408)||(36370406-36370525)
chr3 (289-408)||(43999993-44000112)
chr3 (291-399)||(39072350-39072458)
chr3 (289-408)||(22894684-22894803)
chr3 (1-109)||(31699226-31699333)
chr3 (289-408)||(51339851-51339968)
chr3 (289-408)||(30735564-30735682)
chr3 (289-381)||(29460664-29460756)
chr3 (289-381)||(29471516-29471608)
chr3 (289-373)||(38231297-38231381)
chr3 (235-288)||(37067076-37067129)
chr3 (293-408)||(20856221-20856334)
chr3 (4-83)||(18269875-18269954)
chr3 (315-405)||(53638165-53638255)
chr3 (116-174)||(31699315-31699373)
chr3 (292-385)||(29820390-29820483)
chr3 (115-171)||(18269807-18269863)
[»] scaffold0062 (1 HSPs)
scaffold0062 (289-411)||(6722-6844)
[»] scaffold0092 (1 HSPs)
scaffold0092 (99-175)||(23272-23348)
[»] scaffold0043 (1 HSPs)
scaffold0043 (289-381)||(87259-87350)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-77)||(2946-3021)
[»] scaffold0044 (1 HSPs)
scaffold0044 (64-150)||(42826-42912)
[»] scaffold0725 (1 HSPs)
scaffold0725 (18-59)||(1080-1121)
[»] scaffold0088 (1 HSPs)
scaffold0088 (18-59)||(26996-27037)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-73)||(31223-31295)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 4 - 546
Target Start/End: Original strand, 29099536 - 29100070
Alignment:
Q  4 ccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 103  Q
    |||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29099536 ccattaaccaccacaaaaaccatcgttaatactcaccaaaaactagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 29099635  T
Q  104 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaagacccagtgtcagaaaataactcttga 203  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29099636 caccaccaagaaccaccacgagcaccaccacagaagacccagtatcagcaccaccatggaaaccaccacaaaagacccagtgtcagaaaataactcttga 29099735  T
Q  204 ggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcggtcttatacataaacc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29099736 ggagagttacgttataactccaagctggcggaccccaaccataattcttgcaaagtaactcatgttttgtagctcgagctggcggtcttatacataaacc 29099835  T
Q  304 atcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaa 403  Q
    | |||||||| ||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29099836 accttagatggcatacactc-tttacgtccacacacatttgtgacatgtgacaaaaacattgaaaaaagaaattaaaaggggtgatgatgtgatgtgaaa 29099934  T
Q  404 ttacttaacaaagannnnnnnnnnaggaaactcaaccaagatctatatctatatcaatacgtttatctgttgacatagtggaaacacgtgttttgtgaaa 503  Q
    ||||||||  ||            |||||||| ||| |||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||    
T  29099935 ttacttaa-taattttttttttttaggaaacttaacaaagatctatatct------atacgtttatctgttaacatagtggaaacacgtgttttgtgaaa 29100027  T
Q  504 attttagtactatatctatatctatacgtttatctgttgacat 546  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29100028 attttagtactatatctatatctatacgtttatctgttgacat 29100070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 15495877 - 15496048
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||| ||||||||||   ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||| ||    
T  15495877 ctactattaaccaccaagaaaaccaccattaatcctcaccaaaaaccagcaccagccaccacgagcatcaccaccaaaaaacaacatcagccaccacgag 15495976  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    |||||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||    
T  15495977 catcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccac 15496048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 14351218 - 14351048
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |||| || |||||||||||||||||| |||| || || |||| ||    
T  14351218 ctaccactaaccaccacaaaaaccaccattaattctcaccaaaaaccagcaccaaccaccactagcatcaccaccaaaaactaacaccagccaccacgag 14351119  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    ||||||||  || |||||||||||| | || |||| || | ||| ||||| ||||| |||||||||||||||    
T  14351118 catcaccataaaaaaccaccacgagaaccaccacaaaaaatccaatatcaacacca-catgaaaaccaccac 14351048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 19258857 - 19258742
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    ||||||||||||||||| || || |||||||  |||||| | |||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  19258857 ttatacataaaccatctaaggtggcatacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaaaaagagatgaaaaggggtggtg 19258758  T
Q  391 atgtgatgtgaaatta 406  Q
    ||||||||||||||||    
T  19258757 atgtgatgtgaaatta 19258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 2509028 - 2509147
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| |||||||||  ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  2509028 tcttatacatgaaccaccttaggtgacatacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 2509127  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  2509128 tgatatgatgtaaaattact 2509147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 34307325 - 34307206
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| |||| || |||| ||||||    
T  34307325 tcttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtga 34307226  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  34307225 tgatatgatgtaaaattact 34307206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 11814700 - 11814779
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaa 80  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  11814700 ctaccattaaccatcacaaaaaccaccattaatcctcaccaaaaaccagcaccagccaccatgagcatcaccaccaaaaa 11814779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 39250050 - 39249931
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| |||| || ||     
T  39250050 tcttatacatgaaccatcttaggtggcatacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgg 39249951  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| | |||| ||||||||    
T  39249950 tgatataatgtaaaattact 39249931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 46901922 - 46901803
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| ||||||||||  |||||| |  ||||| |||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  46901922 tcttatacatgaaccaccttaggtgacatacaccattttacaccaacacatatttgtgacacgtggcaaaaacattaaaagaagagatgaaaaagggtga 46901823  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  46901822 tgatatgatgtaaaattact 46901803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 2077523 - 2077418
Alignment:
Q  5 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 104  Q
    ||||||||||| ||||||||||| ||||||||||||||||| | | ||||||||| ||||||||||||| |||||| ||||| || || |||  ||||||    
T  2077523 cattaaccaccacaaaaaccaccattaatcctcaccaaaaatcggtaccagccaccacgagcatcacca-caaaaatcaacaccagccaccatgagcatc 2077425  T
Q  105 accacca 111  Q
    |||||||    
T  2077424 accacca 2077418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 26842092 - 26842000
Alignment:
Q  72 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 164  Q
    ||||||||||||||| || || |||| ||||||| |||||| || ||||||||||| || |||| |||||||||||||| |||||||||||||    
T  26842092 caccaaaaaccaacaccagccaccacgagcatcaacaccaaaaatcaccacgagcaccaccacaaaagacccagtatcaacaccaccatgaaa 26842000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26842127 - 26842049
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaa 80  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  26842127 ctaccattaaccaccacaaaa-caaccattaatcctcaccaaaaaccaacaccagccaccacgagcatcaacaccaaaaa 26842049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 406
Target Start/End: Original strand, 28647392 - 28647474
Alignment:
Q  324 ttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 406  Q
    |||||| | |||||| |||||||| || ||||||||||||||||| || |||| |||||||||| ||||||||||||||||||    
T  28647392 ttttacacccacacatatttgtgatatttggcaaaaacattgaaagaatagatgaaaaggggtggtgatgtgatgtgaaatta 28647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8039197 - 8039259
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 64  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  8039197 ctaccattaaccacca-aaaaaccaccagtaatcctcaccaaaaaccagcatcagccaccacga 8039259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 10494882 - 10494941
Alignment:
Q  116 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 175  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||||||||||| ||||||    
T  10494882 ccaccacgagcaccaacacaaaagacccaatatcaacaccaccatgaaaaccatcacaaa 10494941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 26236824 - 26236753
Alignment:
Q  100 gcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||||||| || |||||||||||||| || |||| ||||| ||  |||||||||| ||||||||||||||    
T  26236824 gcatcaccactaaaaaccaccacgagcaccaccacaaaagactcaaaatcagcaccatcatgaaaaccacca 26236753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 10146971 - 10147049
Alignment:
Q  290 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaa 368  Q
    |||||||||  |||| ||||| || ||||||| |||| || | |||||||| ||||||||||||||||||||| |||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 615641 - 615723
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    |||||||| ||| || |||||  |||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  615641 ctaccattgaccgccacaaaaggcaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 615723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34654839 - 34654920
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacc 82  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || ||| |||||| ||  ||| ||||||||||||||    
T  34654839 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacacaagccaccacacgcagcaccaccaaaaacc 34654920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 2077419 - 2077379
Alignment:
Q  132 cacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  2077419 cacaaaagacccagtatcaacaccaccatggaaaccaccac 2077379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 8848987 - 8848923
Alignment:
Q  342 ttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatta 406  Q
    |||||||||||| |||||||||||||| |||||||   | |||||||   |||||||||||||||    
T  8848987 ttgtgacatgtgacaaaaacattgaaataagagatgggagggggtgagagtgtgatgtgaaatta 8848923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 9643009 - 9642933
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg-tgatgatgtgatgtgaaattact 408  Q
    |||||| | ||||||||  || |||||||| ||||| ||||||| | |||||| ||||||| |||||||||||||||    
T  9643009 cacacataattgtgacacatgacaaaaacaatgaaagaagagatgagaagggggtgatgatatgatgtgaaattact 9642933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39709234 - 39709190
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaa 45  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||    
T  39709234 ctaccattaaccaccacaaaaatcaccattaaccctcaccaaaaa 39709190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 9e-53; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 6705509 - 6705682
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| || || |||| ||    
T  6705509 ctaccattaaccaacacgaaaaccaccattaatcctcaccaaaaaccaacaccaaccaccacgagcatcaccaccaaaaaacaacaccagccaccacgag 6705608  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 174  Q
    |||||||||||| |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||    
T  6705609 catcaccaccaaaaaccaccacgagcaccaccacaaaagaccaagtatcagcaccaccatgaaaaccaccacaa 6705682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 40900224 - 40900367
Alignment:
Q  32 atcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcat 131  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||  || |||  || ||||||||||| | |||||||||||| ||     
T  40900224 atcctcaccaaaaaccagcaccagccaccacgagcatcaccacaaaaaaccagcatctgccaccatgagtatcaccaccaaaagccaccacgagcaccac 40900323  T
Q  132 cacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 175  Q
    |||| ||||||||||||||||||||||||  |||||||||||||    
T  40900324 cacaaaagacccagtatcagcaccaccatagaaaccaccacaaa 40900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 37914421 - 37914308
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||     
T  37914421 ttatacataaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgata 37914322  T
Q  391 atgtgatgtgaaat 404  Q
    ||||||||||||||    
T  37914321 atgtgatgtgaaat 37914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 36315565 - 36315680
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  36315565 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaagaggtga 36315664  T
Q  389 tgatgtgatgtgaaat 404  Q
    | ||||||||||||||    
T  36315665 taatgtgatgtgaaat 36315680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 44958117 - 44958236
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  44958117 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaagggtga 44958216  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  44958217 tgatatgatgtaaaattact 44958236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 33732573 - 33732692
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||     
T  33732573 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgg 33732672  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  33732673 tgatatgatgtaaaattact 33732692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 38531433 - 38531278
Alignment:
Q  20 aaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccac 119  Q
    |||||| | ||||||||||| |||||||||||||| |||| || |||||||| ||||||||| |||| || || |||| || |||||| |||| || |||    
T  38531433 aaaccatcattaatcctcacaaaaaaccagcaccatccaccactagcatcacaaccaaaaactaacaccagccaccacgagtatcaccgccaaaaatcac 38531334  T
Q  120 cacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 175  Q
    |||||||| || |||| || |||||||||||||||||||||| ||| |||||||||    
T  38531333 cacgagcaccaccacaaaaaacccagtatcagcaccaccatggaaaacaccacaaa 38531278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14950879 - 14950753
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||  ||||||||| || |||||||||||||||||  |||| || ||||||| ||    
T  14950879 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaataccagccaccactagcatcaccaccaaaaaataacaccagccgccacgag 14950780  T
Q  101 catcaccaccaagaaccaccacgagca 127  Q
    |||||||||||| || |||||| ||||    
T  14950779 catcaccaccaaaaatcaccacaagca 14950753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 37499052 - 37498931
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa--ggggt 386  Q
    ||||||| || ||||||||||  || ||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  37499052 tcttatatatcaaccatcttaactggcatacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagagggt 37498953  T
Q  387 gatgatgtgatgtgaaattact 408  Q
    |||||| |||||| ||||||||    
T  37498952 gatgatatgatgtaaaattact 37498931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 3831081 - 3830965
Alignment:
Q  290 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 389  Q
    ||||||||| ||||| ||||| |||||||||| ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  3831081 cttatacatgaaccaccttaggtgacatacacccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtggtgat 3830984  T
Q  390 gatgtgatgtgaaattact 408  Q
     || |||||| ||||||||    
T  3830983 tatctgatgtaaaattact 3830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 14572999 - 14573118
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| ||||| || ||| ||| |||||||   ||||||||||||||||| || ||||||||||||||| |||||||  ||| ||||||    
T  14572999 tcttatacataaaccaccttaggtggcatccacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatggaaaagggtga 14573098  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  14573099 tgatatgatgtaaaattact 14573118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 24137235 - 24137160
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  24137235 cacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagggatgaggatgtgatgtgaaattact 24137160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9910631 - 9910740
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||| || |||||||||| ||||| ||||||| |||||||||||| || || |||| ||    
T  9910631 ctaccattaaccaccacaaaaaccacaattaatccttaccaaaaatcaacaccagccaccacgagtatcacca-caaaaaccaacaccaaccaccacgag 9910729  T
Q  101 catcaccacca 111  Q
    |||||||||||    
T  9910730 catcaccacca 9910740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 6376418 - 6376306
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||     |||||||| ||||||| |||| |||||| |    
T  6376418 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggc-----cattgaaagaagagatgaaaatgggtgagg 6376324  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||||||||||||||    
T  6376323 atgtgatgtgaaattact 6376306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 28164938 - 28164837
Alignment:
Q  21 aaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccacc 120  Q
    ||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| || || |||  |||||||||||||| |||||||    
T  28164938 aaccaccattactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgagcatcaccaccaaaaaccacc 28164839  T
Q  121 ac 122  Q
    ||    
T  28164838 ac 28164837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 16089826 - 16089944
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||  || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||  ||||     
T  16089826 tcttatacatgaaccaccttaagtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagaga-taaaaaaggtgg 16089924  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  16089925 tgatatgatgtaaaattact 16089944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 408
Target Start/End: Original strand, 41188824 - 41188892
Alignment:
Q  340 atttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    |||| |||||||||||||||||||||||||| || || ||||||| |||||||||||||| ||||||||    
T  41188824 atttatgacatgtggcaaaaacattgaaaaatgatatgaaaagggatgatgatgtgatgtaaaattact 41188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4869516 - 4869598
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    |||||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  4869516 ctaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 4869598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 1551859 - 1551698
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||| ||| ||||| | |||||||          |||||||    
T  1551859 ctaccattgaccacctcaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacgcgcagcaccatccaaaacca----------ccacaag 1551770  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    |||||||||| | |||||||||||||  |  |||  ||||||||  |||||||| |||| ||||||||||||    
T  1551769 catcaccacccaaaaccaccacgagccccgccactaaagacccaaaatcagcactaccaagaaaaccaccac 1551698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 3921536 - 3921612
Alignment:
Q  94 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 170  Q
    ||||||||||||||||||| |||||||||||||  |  |||| | ||||||  ||||||||||||| ||||||||||    
T  3921536 ccacaagcatcaccaccaaaaaccaccacgagccccgccacaaatgacccaaaatcagcaccaccaagaaaaccacc 3921612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 17282206 - 17282046
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| ||  |||| |||| ||| ||| ||||||| |||||||          ||||||     
T  17282206 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaaaccaaccaccacgcgcagcaccacccaaaacca----------ccacaaa 17282117  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||||||||| ||||||||||||   |  |||| ||||||||  ||||||||||||| |||||||||||    
T  17282116 catcaccaccaaaaaccaccacgagtcccgccacaaaagacccaaaatcagcaccaccaagaaaaccacca 17282046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 27888778 - 27888824
Alignment:
Q  18 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 64  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  27888778 aaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacga 27888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 34660230 - 34660303
Alignment:
Q  94 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 167  Q
    ||||||| | ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  34660230 ccacaagaaccaccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 34660303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 1895351 - 1895431
Alignment:
Q  91 ccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||| ||||||||||||||| |||||||||||||  |  |||| ||||||||  ||||  ||||||| |||||||||||    
T  1895351 ccgccataagcatcaccaccaaaaaccaccacgagccccgccacaaaagacccaaaatcaataccaccaagaaaaccacca 1895431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 40680874 - 40681044
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| || |||| ||    
T  40680874 ctaccattaaccaccacgaaaaccaccattaatcctcaccaaaaaccagcaccaaccaccatgagcatcaccaccaaaaaacaacatcagccaccacgag 40680973  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||||||||| |||||||| ||||| || |||| |||||| ||||||| ||||||||| ||||||||||    
T  40680974 catcaccaccaaaaaccaccatgagcaccaccacaaaagaccaagtatcaacaccaccataaaaaccacca 40681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 26331261 - 26331090
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||| || |||| ||    
T  26331261 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccagacaccacgagcatcaccacctaaaaccaacatcagccaccacgag 26331162  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    |||||||||||| ||| |  |||  || || |||| ||||| || ||||| |||||||||  ||||||||||    
T  26331161 catcaccaccaaaaactattacggacaccaccacaaaagactcaatatcaacaccaccatagaaaccaccac 26331090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 1815803 - 1815684
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||||||||| |||||||||| |||||||   |||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  1815803 tcttatacatgaaccatcttaggtgacatacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 1815704  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  1815703 tgatatgatgtaaaattact 1815684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 40888129 - 40888010
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| ||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||     
T  40888129 tcttatacataaaccaccttaggtggcatacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgg 40888030  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  40888029 tgatatgatgtaaaattact 40888010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 9408226 - 9408107
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| || || |||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  9408226 tcttatacatgaaccacctcaggtgacatacgcccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 9408127  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  9408126 tgatatgatgtaaaattact 9408107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 39370931 - 39371050
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  39370931 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtga 39371030  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  39371031 tgatatgatgtaaaattact 39371050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 12156370 - 12156484
Alignment:
Q  8 taaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcacc 107  Q
    |||||||| ||||||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||| || || ||||||||||||||    
T  12156370 taaccaccacaaaaaccatcattaattctcaccaaaaaccagcaccagccaccactagcatcaccaccaaaaactaacaccagccaccacaagcatcacc 12156469  T
Q  108 accaagaaccaccac 122  Q
    | ||| |||||||||    
T  12156470 atcaaaaaccaccac 12156484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 2237282 - 2237399
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||| ||||| ||||| |||||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||||    
T  2237282 ttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatg 2237381  T
Q  391 atgtgatgtgaaattact 408  Q
    || |||||| ||||||||    
T  2237382 atatgatgtaaaattact 2237399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 320 - 408
Target Start/End: Original strand, 17225352 - 17225440
Alignment:
Q  320 actcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  17225352 actcttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagaggtgatgatgtgatgtgaaattact 17225440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 289 - 406
Target Start/End: Complemental strand, 4300730 - 4300613
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| |||||| |||| ||||||| |  ||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||| ||||  ||||     
T  4300730 tcttatacatgaaccattttaggtgacatatatccttttacacccacacatatttgtgacatatggcaaaaacattgaaataagagataaaaaatggtgg 4300631  T
Q  389 tgatgtgatgtgaaatta 406  Q
    ||||||||||||||||||    
T  4300630 tgatgtgatgtgaaatta 4300613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 24867249 - 24867100
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||  |||||||||||| |||||||||  ||||||||| |  ||  | || |||| ||    
T  24867249 ctaccattaaccaacacaaaaaccaccattaatcctcaccaaaaattagcaccagccaccacgagcatcctcaccaaaaatcggcactagccaccacgag 24867150  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 150  Q
      |||||||||| |||||||||||||| || || | ||||||||||||||    
T  24867149 tctcaccaccaaaaaccaccacgagcaccaccataaaagacccagtatca 24867100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34574272 - 34574162
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||| |||||| |||||||||||||||||||| ||||| || || | || ||    
T  34574272 ctaccattaaccaccacaaaa-ccaccattactcctcaccaaaaaccaacactagccaccacgagcatcaccaccaaaaatcaacaccagccactacgag 34574174  T
Q  101 catcaccaccaa 112  Q
    ||||||||||||    
T  34574173 catcaccaccaa 34574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 406
Target Start/End: Original strand, 14831559 - 14831665
Alignment:
Q  300 aaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgt 399  Q
    ||||| ||||| || ||||||| ||||||| | ||||||||||||||| | |||||||||||||||||| ||||||| |||| |||||||||| ||||||    
T  14831559 aaccaccttaggtggcatacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgt 14831658  T
Q  400 gaaatta 406  Q
     ||||||    
T  14831659 aaaatta 14831665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 27170325 - 27170243
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||| |||||||||||||||    
T  27170325 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 27170243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 13347134 - 13347251
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| || |||| |||| | ||||||    
T  13347134 ttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaatagatgaaaaagagtgatg 13347233  T
Q  391 atgtgatgtgaaattact 408  Q
    || ||||||  |||||||    
T  13347234 atatgatgtataattact 13347251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 42268936 - 42268836
Alignment:
Q  10 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 109  Q
    |||||| ||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||| | |||||||||| || || |||| |||||||||||    
T  42268936 accaccacaaaaaccaccattaatcctcaccaaaaatcagaaccagccaccacgagcatcacca-cgaaaaccaacaccagccaccacgagcatcaccac 42268838  T
Q  110 ca 111  Q
    ||    
T  42268837 ca 42268836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 33404623 - 33404531
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 381  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  33404623 tcttatacatgaaccaccttaggtgccatacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 33404531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 294 - 408
Target Start/End: Complemental strand, 41004031 - 41003918
Alignment:
Q  294 tacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatg 393  Q
    ||||| |||||  |||| || ||||||| ||||||| |||| |||||||| |||||||||||||||| |||| ||||||| || ||||||| ||||||||    
T  41004031 tacatgaaccactttaggtggcatacacccttttacactcatacacatttatgacatgtggcaaaaatattg-aaaaagatataaaaagggatgatgatg 41003933  T
Q  394 tgatgtgaaattact 408  Q
    |||||| ||||||||    
T  41003932 tgatgtaaaattact 41003918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 27553560 - 27553441
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| |||||| |||| || |||| ||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||  ||||  |||||    
T  27553560 tcttatacatgaaccattttaggtggcatataccattttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagaagaaaaatggtga 27553461  T
Q  389 tgatgtgatgtgaaattact 408  Q
    | || |||||| ||||||||    
T  27553460 ttatctgatgtaaaattact 27553441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 31800596 - 31800681
Alignment:
Q  323 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    ||||||| | ||||||||||| ||||| |||||||||| ||||||| || |||| ||||||||||||||| |||||| ||||||||    
T  31800596 cttttacacccacacacatttatgacacgtggcaaaaatattgaaagaaaagatgaaaaggggtgatgatatgatgtaaaattact 31800681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40600035 - 40599972
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacga 64  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||||    
T  40600035 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaacaccagccaccacga 40599972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 12164255 - 12164339
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 373  Q
    |||||||||| ||||||||||| || || ||| ||||| |  |||||||||| ||||| ||||||||||||||||||||| ||||    
T  12164255 tcttatacatgaaccatcttaggtggcacacattctttaatactcacacacagttgtggcatgtggcaaaaacattgaaagaaga 12164339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 19596252 - 19596169
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagag 374  Q
    |||||||| ||||| ||||| || |||||||  ||||||   ||| |||||||||||||||||||||||||||||||| |||||    
T  19596252 ttatacatgaaccaccttaggtggcatacacctttttacatccacgcacatttgtgacatgtggcaaaaacattgaaagaagag 19596169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26656639 - 26656790
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| ||||| ||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||          |||||||    
T  26656639 ctaccattgaccaccacaaaa-ccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca----------ccacaag 26656727  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 163  Q
    || ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26656728 caccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26656790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 26928226 - 26928377
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| ||||| ||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||          |||||||    
T  26928226 ctaccattgaccaccacaaaa-ccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca----------ccacaag 26928314  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 163  Q
    || ||||||||| ||||||||||||| ||  |||| || | |||  |||||||||||||||||    
T  26928315 caccaccaccaaaaaccaccacgagcctcgccacaaaacaaccaaaatcagcaccaccatgaa 26928377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 7271718 - 7271792
Alignment:
Q  2 taccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccacca 76  Q
    ||||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| ||||||||||||    
T  7271718 taccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccacca 7271792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 6030564 - 6030500
Alignment:
Q  19 aaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    ||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  6030564 aaaaccaccattaaccatcactaaaaagcaacaccagccaccacgcgcatcaccaccaaaaacca 6030500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 7271788 - 7271851
Alignment:
Q  104 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 167  Q
    ||||||||| ||||||||||||| ||  |||| || |||||  |||||||||||||||||||||    
T  7271788 caccaccaaaaaccaccacgagcctcgccacaaaacacccaaaatcagcaccaccatgaaaacc 7271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 19124657 - 19124540
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    ||||||||||  || |||||||||| |||||||  ||| || | |||||||| ||||||| ||||||||||||||| ||| ||||||| |||    ||||    
T  19124657 tcttatacatggactatcttagatggcatacaca-tttgacacccacacacaattgtgacgtgtggcaaaaacatt-aaagaagagatgaaagaatgtga 19124560  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  19124559 tgatatgatgtaaaattact 19124540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 41355772 - 41355620
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||   || ||||||| |||||||          |||||||    
T  41355772 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacacacaacaccacccaaaacca----------ccacaag 41355683  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaa 163  Q
    ||| |||||||| |||||| ||||||  |  |||| ||||||||  |||||||||||||||||    
T  41355682 cataaccaccaaaaaccactacgagccccgccacaaaagacccaaaatcagcaccaccatgaa 41355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42221396 - 42221450
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccag 55  Q
    ||||||||||||||| |||||| |||| ||| || |||||||| |||||||||||    
T  42221396 ctaccattaaccaccacaaaaatcaccattactcgtcaccaaagaccagcaccag 42221450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 45873110 - 45873280
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||| |||||||||||||  ||||||||||| || || |||| ||    
T  45873110 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaacaagcaccaaacaccacgagcatcaccataaaaaaccaacaccagccaccacgag 45873209  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||||||||| ||||||||||| || || |||| |||||||| ||| | ||||||||||||||||||||    
T  45873210 catcaccaccaaaaaccaccacgaacaccaccacaaaagacccaatattaacaccaccatgaaaaccacca 45873280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 55728704 - 55728871
Alignment:
Q  5 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 104  Q
    ||||||||||| ||||||||||| |||||||||||||||||| || ||||||||| || |||||||||||||||||| |||| |  || |||| ||||||    
T  55728704 cattaaccaccacaaaaaccaccattaatcctcaccaaaaactagtaccagccaccactagcatcaccaccaaaaactaacaccggccaccacgagcatc 55728803  T
Q  105 accaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    |||| ||| || ||||||||||| || |||| || |  |||||||| |||||||||| ||||||||||    
T  55728804 accatcaaaaatcaccacgagcaccaccacaaaaaattcagtatcaacaccaccatggaaaccaccac 55728871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 45829444 - 45829329
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| |||||  |||| ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  45829444 tcttatacatgaaccactttaggtgacatacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 45829345  T
Q  389 tgatgtgatgtgaaat 404  Q
    | ||||||||||||||    
T  45829344 taatgtgatgtgaaat 45829329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 46192363 - 46192478
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| || || ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  46192363 tcttatacatgaatcaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtga 46192462  T
Q  389 tgatgtgatgtgaaat 404  Q
    | ||||||||||||||    
T  46192463 taatgtgatgtgaaat 46192478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 42677742 - 42677627
Alignment:
Q  7 ttaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcac 106  Q
    ||||||||| ||||||||||| ||||||||||| |||||| |||||||| ||| |||||||||||||||||||| ||||| || || |||||||||||||    
T  42677742 ttaaccaccacaaaaaccaccattaatcctcactaaaaacaagcaccagacaccacgagcatcaccaccaaaaatcaacaccagccaccacaagcatcac 42677643  T
Q  107 caccaagaaccaccac 122  Q
    | |||| |||||||||    
T  42677642 cgccaaaaaccaccac 42677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 12130522 - 12130633
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| || |||| |     
T  12130522 ctaccattgaccaccacaaaaactatcattaatcctcaccaaaaaccagcaccagccaccacgagcatcaccaccaaaacccaaaatcagccaccacgac 12130621  T
Q  101 catcaccaccaa 112  Q
    ||||||||||||    
T  12130622 catcaccaccaa 12130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 44275710 - 44275829
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| ||||| || |||| ||  |||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||    
T  44275710 tcttatacataaaccaccttaggtggcatataccattttacactcacacacatttgtgacacgtgccaaaaatattgaaagaagagattaaaaagggtga 44275809  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  44275810 tgatatgatgtaaaattact 44275829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 38093223 - 38093393
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||| |||||||| |||||| |||| | |||||||||||||||||| ||||| | || || |||||||||||||||||| |||| || || |||| ||    
T  38093223 ctaccaataaccaccacaaaaaacaccataaatcctcaccaaaaaccatcaccatctaccactagcatcaccaccaaaaactaacaccagccaccacgag 38093322  T
Q  101 catcaccacc-aagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacc 170  Q
    ||||||| || || |||||||||||| | || |||| || ||||||||||| |||||||||  ||||||||    
T  38093323 catcaccgccaaaaaaccaccacgagtaccaccacaaaaaacccagtatcaacaccaccatagaaaccacc 38093393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 3672278 - 3672397
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  3672278 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 3672377  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| ||||||  |||||||    
T  3672378 tgatatgatgtataattact 3672397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 6112634 - 6112753
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  6112634 tcttatacatgaaccaccttagatggcatacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 6112733  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  6112734 tgatatgatgtaaaattact 6112753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 7217769 - 7217888
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| ||||| || ||||||| |||| || |  |||||||||||||||| |||||||||||||| ||| ||||||| |||| ||||||    
T  7217769 tcttatacataaaccaccttaggtggcatacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagataaaaaagggtga 7217868  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  7217869 tgatatgatgtaaaattact 7217888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 28093283 - 28093164
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||  |||||| |||| ||||||    
T  28093283 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 28093184  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||| ||||    
T  28093183 tgatatgatgtaaaaatact 28093164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 49243819 - 49243938
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| |||||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||    
T  49243819 tcttatacatgaaccaccttaggtggcatacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaaaagtga 49243918  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  49243919 tgatatgatgtaaaattact 49243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 21391142 - 21391023
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| | ||||    
T  21391142 tcttatacatgaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaatgagtga 21391043  T
Q  389 tgatgtgatgtgaaattact 408  Q
      || |||||| ||||||||    
T  21391042 atatatgatgtaaaattact 21391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 35544916 - 35545035
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||||||||| ||  ||||||  ||||||   |||| |||||||||| | |||||||||||||||||| |||| || |||||||||||    
T  35544916 tcttatacatgaaccatcttaggtggtatacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaagatataaaaaggggtga 35545015  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  35545016 tgatatgatgtaaaattact 35545035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 51038811 - 51038887
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa-ggggtgatgatgtgatgtgaaattact 408  Q
    |||||||| |||||||||||| |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||    
T  51038811 cacacacaattgtgacatgtgacaaaaacattgaaagaagagatgaaaagggggtgatggtgtgatgtgaaattact 51038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14441123 - 14441174
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcac 52  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  14441123 ctaccattaaccagcacaaaaaccaccattaatcctcaccaaaaaccagcac 14441174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 47518712 - 47518552
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| |||||| |||  |||| ||||||| |||| || |||||||||| |||||||  |||||| |||||||          ||||||     
T  47518712 ctaccattgaccaccacaaaaatcactattaaccctcacctaaaagcaacaccagccaccacgagcagtaccacccaaaacca----------ccacaaa 47518623  T
Q  101 catcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||||||||| ||||||||||||| | | |||| |||| |||  ||||||| ||||| |||||||||||    
T  47518622 catcaccaccaaaaaccaccacgagccttaccacaaaagatccaaaatcagcaacaccaagaaaaccacca 47518552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34227254 - 34227172
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    |||||||| |||| | | ||||||||| |||| ||||||| |||| || |||||||||| ||| ||||||||||| |||||||    
T  34227254 ctaccattgaccatcacgaaaaccaccattaaccctcacctaaaagcaacaccagccaccacgcgcatcaccacccaaaacca 34227172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 23054411 - 23054338
Alignment:
Q  94 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaacc 167  Q
    ||||||||| ||||||||| ||||| |||||||  |  |||| ||||||||  |||||||||||||||||||||    
T  23054411 ccacaagcaccaccaccaaaaaccatcacgagctccgccacaaaagacccaaaatcagcaccaccatgaaaacc 23054338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 24957819 - 24957685
Alignment:
Q  20 aaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccac 119  Q
    |||| ||| |||| |||||||||||| || |||||||||| ||  |||||||||||||||||||          |||| |||| ||||  ||| || |||    
T  24957819 aaactaccattaaccctcaccaaaaaacaacaccagccaccacatgcatcaccaccaaaaacca----------ccacgagcaccaccgtcaaaaatcac 24957730  T
Q  120 cacgagcatcatcacagaagacccagtatcagcaccaccatgaaa 164  Q
    |||||||| ||||||| |||| |||  ||||||||||||||||||    
T  24957729 cacgagcaccatcacaaaagaaccaaaatcagcaccaccatgaaa 24957685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 43245522 - 43245562
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttac 329  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  43245522 tcttatacatgaaccatcttagatgacatacacccttttac 43245562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 54849793 - 54849909
Alignment:
Q  290 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 389  Q
    ||||||||| ||||| |||||||  | ||||| |||| |  | ||||| || |||||||| ||| |||||| ||||||| ||||||| | |  || ||||    
T  54849793 cttatacatgaaccaccttagatagcgtacacactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgat 54849892  T
Q  390 gatgtgatgtgaaatta 406  Q
    |||||||||||||||||    
T  54849893 gatgtgatgtgaaatta 54849909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 53202127 - 53202241
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    |||||||| |||||| |||||| |||| |||| ||||||| |||| || |||||||||| ||| ||| ||| ||| |||||||          |||||||    
T  53202127 ctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacaccagccaccacgcgcagcac-acctaaaacca----------ccacaag 53202215  T
Q  101 catcaccaccaagaaccaccacgagc 126  Q
    |||||||||||| |||||||||||||    
T  53202216 catcaccaccaaaaaccaccacgagc 53202241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12489254 - 12489182
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 73  Q
    ||||||||||||||| |||||| |||| |||| | |||| |||  ||| ||||| |||| |||||||||||||    
T  12489254 ctaccattaaccaccacaaaaatcaccattaaccatcacaaaagtccaccaccacccaccacgagcatcacca 12489182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 23980137 - 23980254
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| | ||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  23980137 ttatacataaaccaccataggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 23980236  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||||||||||||||    
T  23980237 atgtgatgtgaaattact 23980254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 21590682 - 21590510
Alignment:
Q  5 cattaaccaccccaaaaa-ccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcat 103  Q
    ||||||||||| |||||| ||||| ||| | ||||  |||||||| |||||| ||| |||||||||||||| |||||||||||||| || |||||||| |    
T  21590682 cattaaccaccacaaaaaaccaccattagttctcaaaaaaaaccaacaccagtcaccacgagcatcaccacaaaaaaccaacatcagccaccacaagcgt 21590583  T
Q  104 caccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaaa 176  Q
    ||||| ||| |||||||||||||  || |||| |||||||| |||||||||||||||  |||| |||||||||    
T  21590582 caccatcaaaaaccaccacgagccccaccacaaaagacccaatatcagcaccaccatagaaactaccacaaaa 21590510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 5811348 - 5811231
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| | ||| || ||||||  ||||| | | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |    
T  5811348 ttatacataaaccaccataggtggcatacatcctttttcacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgagg 5811249  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||||||||||||||    
T  5811248 atgtgatgtgaaattact 5811231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 7700070 - 7699951
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700070 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7699971  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  7699970 tgatatgatataaaattact 7699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 7700268 - 7700149
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700268 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700169  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  7700168 tgatatgatataaaattact 7700149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 7700466 - 7700347
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700466 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700367  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  7700366 tgatatgatataaaattact 7700347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 7700664 - 7700545
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| |||||||| ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  7700664 tcttatacataaaccaccttagatggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatga 7700565  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  7700564 tgatatgatataaaattact 7700545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 42221150 - 42221031
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || |||||||| |||||| | ||||||||||||||||| |||||||||||||||||| |||| || |||||||||||    
T  42221150 tcttatacatgaaccaccttaggtggcatacacttttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagatataaaaaggggtga 42221051  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  42221050 tgatatgatgttaaattact 42221031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 13108154 - 13108270
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| |||||  | ||||||| ||||||| | ||||||||||||||||||||||||||||| |||||| |||||| | |||||||||| |    
T  13108154 ttatacataaaccaccttaggcggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagaga-tgaaaggggtgagg 13108252  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||||||||||||||    
T  13108253 atgtgatgtgaaattact 13108270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31039008 - 31039129
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||| ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| || || |||  ||    
T  31039008 ctaccattaaccaccacaaaaaccaccattactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaaccaacaccaaccaccatgag 31039107  T
Q  101 catcaccaccaagaaccaccac 122  Q
    ||||||||| || |||||||||    
T  31039108 catcaccactaaaaaccaccac 31039129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 31148296 - 31148413
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||| ||||||||||| || ||||||| ||||||| | |||||||||||||||||  ||||||||||||||||| ||||||| |||| ||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatgaaaatgggtgatg 31148395  T
Q  391 atgtgatgtgaaattact 408  Q
    || |||||| ||||||||    
T  31148396 atatgatgtaaaattact 31148413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 28307682 - 28307563
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||| | ||||| || ||||||| ||||||| | |||||||||||| |||| |||||||||||||||||| ||||||| |||| ||||||    
T  28307682 tcttatacataaactaccttaggtggcatacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 28307583  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  28307582 tgatatgatgtaaaattact 28307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 36346751 - 36346633
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||||||||| || ||||||| ||||||| | || |||||||||||||| |||||||||||||||||| ||||||| ||||  |||||    
T  36346751 tcttatacataaaccatcttaggtggcatacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa-aggtga 36346653  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  36346652 tgatatgatgtaaaattact 36346633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 21807509 - 21807390
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | |||||| |||||||| |||||||||||| ||||||| ||||||| |||| || |||    
T  21807509 tcttatacatgaaccaccttagatggcatacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatga 21807410  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||||| |||||||||||||    
T  21807409 tgatgttatgtgaaattact 21807390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 26972390 - 26972271
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||  |||||| |||| ||||||    
T  26972390 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtga 26972291  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  26972290 tgatatgatgtaaaattact 26972271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 34108430 - 34108549
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| |||||||||| ||||||| | |||||| ||||||||||| || |||||||||||||  ||||||| |||| ||||||    
T  34108430 tcttatacatgaaccaccttaggtgacatacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtga 34108529  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  34108530 tgatatgatgtaaaattact 34108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 30887704 - 30887826
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||| ||||||| || ||||||| ||||||| | |||| |||||||||||| || ||||||||||||||  ||||||| |||| ||||||    
T  30887704 tcttatacatgaacaatcttaggtggcatacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtga 30887803  T
Q  389 tgatgtgatgtgaaattacttaa 411  Q
    |||| |||||| |||||||||||    
T  30887804 tgatatgatgtaaaattacttaa 30887826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 24718022 - 24718127
Alignment:
Q  10 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 109  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||   |||||||||| || || |||| |||||||||||    
T  24718022 accaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgagcatcacca-tgaaaaccaacaccaaccaccacgagcatcaccac 24718120  T
Q  110 caagaac 116  Q
    || ||||    
T  24718121 catgaac 24718127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 408
Target Start/End: Complemental strand, 20086781 - 20086696
Alignment:
Q  323 cttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    ||||||| | |||| ||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  20086781 cttttacacccacatacatttgagacatctggcaaaaacattaaaagaagagataaaaaggggtgatgatgtgatgtgaaattact 20086696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 336 - 408
Target Start/End: Original strand, 46475075 - 46475147
Alignment:
Q  336 acacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    |||||||||||||||||  |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  46475075 acacatttgtgacatgtaacaaaaacattgaaagaagagatgaaaaggggtgacgatgtgatgtgaaattact 46475147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 45782847 - 45782728
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| |||||  |||| || ||||||   |||||| | ||||||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  45782847 tcttatacatcaaccactttaggtggcatacatcattttacacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 45782748  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  45782747 tgatatgatgtaaaattact 45782728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 34828113 - 34828188
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||||||    
T  34828113 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtgatgatgatatgatgtaaaattact 34828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 408
Target Start/End: Original strand, 38321014 - 38321132
Alignment:
Q  290 cttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgat 389  Q
    ||||||||| ||||||||||| || |||||||  ||| || | |||| ||| ||||||||||||||||||||||||||| |||| || | | | ||||||    
T  38321014 cttatacattaaccatcttaggtggcatacacattttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagaggaggtgat 38321113  T
Q  390 gatgtgatgtgaaattact 408  Q
    | |||||||||||| ||||    
T  38321114 ggtgtgatgtgaaagtact 38321132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3302436 - 3302518
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    |||||||| |||||| ||||||||||| ||||  ||||||||||| || |||||||||| ||| ||| |||||||||||||||    
T  3302436 ctaccattgaccaccacaaaaaccaccattaacactcaccaaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 3302518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 15020288 - 15020402
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| | ||| || ||||||  ||||||| | ||||  |||||||||||| ||||||||||||||||| ||||||   |||||||||| |    
T  15020288 ttatacataaaccaccataggtggcatacaaccttttacacccaca--catttgtgacatatggcaaaaacattgaaagaagaga-cgaaaggggtgaag 15020384  T
Q  391 atgtgatgtgaaattact 408  Q
    || |||||||||||||||    
T  15020385 atatgatgtgaaattact 15020402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 43047794 - 43047689
Alignment:
Q  5 cattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatc 104  Q
    ||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||| |||| ||| |||| | |||||||||| || || |||| ||||||    
T  43047794 cattaaccaccacaaaaaccaccattaatcctcacaaaaaatcagcaccaaccaccacgaacattacca-cgaaaaccaacaccagccaccacgagcatc 43047696  T
Q  105 accacca 111  Q
    | |||||    
T  43047695 atcacca 43047689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 42950156 - 42950113
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 376  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  42950156 cacacacatttgtgatatgtggcaaatacattgaaaaaagagat 42950113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 36582839 - 36582894
Alignment:
Q  3 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 59  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||| |||| |||||    
T  36582839 accattaaccacca-aaaaaccaccagtaatcctcaccaaaaaccaacacccgccac 36582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 14022940 - 14023057
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |    
T  14022940 ttatacataaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgacaaggggtgacg 14023039  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||||||||||||||    
T  14023040 atgtgatgtgaaattact 14023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 24208450 - 24208567
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||||||||||| ||| ||  ||||||| |||||| | ||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||| |    
T  24208450 ttatacataaaccatcataggtggtatacactattttacacccacacacatttgtgatatgtggcaaaaacattgaaagaagagatgaaaaagggtgagg 24208549  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||||||||||||||    
T  24208550 atgtgatgtgaaattact 24208567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 3987092 - 3986973
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||    
T  3987092 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagggatga 3986993  T
Q  389 tgatgtgatgtgaaattact 408  Q
    | || |||||| ||||||||    
T  3986992 taatatgatgtaaaattact 3986973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 32747760 - 32747641
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||| |||  |||||||||||| |||||| |||||| || ||||||||||||||||||||||| || || |||  ||    
T  32747760 ctaccattaaccaccacaaaaaccaccattacacctcaccaaaaatcagcactagccaccaccagcatcaccaccaaaaaccaacaccagccaccatgag 32747661  T
Q  101 catcaccaccaagaaccacc 120  Q
    |||||||||||| |||||||    
T  32747660 catcaccaccaaaaaccacc 32747641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 13697573 - 13697691
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    ||||||||||||||||||||||||||||| ||| ||||||| | || |||||||||||| | |||| ||||||||||||| ||||||| |||| ||||||    
T  13697573 tcttatacataaaccatcttagatgacatgcacccttttacac-catacacatttgtgatacgtggtaaaaacattgaaagaagagatgaaaacgggtga 13697671  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  13697672 tgatatgatataaaattact 13697691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 3118234 - 3118115
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    ||||||| || ||||| ||||| || ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| || |||| |||| |||||     
T  3118234 tcttatatatgaaccaccttaggtggcatacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagataaaaaagggtgg 3118135  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||  |||||| ||||||||    
T  3118134 tgacatgatgtaaaattact 3118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 15345844 - 15345727
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || |||| |||||||||| | || |||  ||||||||| |||||||||||||||||| || |||| ||||  |||||    
T  15345844 tcttatacatcaaccaccttaggtggcatatactcttttacacccataca--tttgtgacacgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 15345747  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  15345746 tgatatgatatcaaattact 15345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 30845463 - 30845542
Alignment:
Q  30 taatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccac 109  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||| ||||||| |||| || || |||| |||| ||||||    
T  30845463 taatcctcaccgaaaacaagcaccagccaacacgagcatcaccatcaaaaactaacaccagccaccacgagcaccaccac 30845542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9566804 - 9566861
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 59  Q
    |||||||||||||||  ||||||||||  ||||||||||||||||||| |||| |||||    
T  9566804 ctaccattaaccacca-aaaaaccaccaataatcctcaccaaaaaccaacacccgccac 9566861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11366700 - 11366755
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagcc 57  Q
    |||||||||||||||  ||||||||||  | |||||||||||||||||||| |||||    
T  11366700 ctaccattaaccacca-aaaaaccaccaatgatcctcaccaaaaaccagcatcagcc 11366755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 21881411 - 21881479
Alignment:
Q  94 ccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatga 162  Q
    ||||||||| ||||||||| ||||||||||||   ||  ||| ||||||||  ||||||||||||||||    
T  21881411 ccacaagcaccaccaccaaaaaccaccacgagtcccacaacaaaagacccaaaatcagcaccaccatga 21881479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 30432343 - 30432462
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| |||||||| ||||||| ||||||  | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  30432343 tcttatacatgaaccaccttagatggcatacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtga 30432442  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  30432443 tgatatgatgtaaaattact 30432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 12665348 - 12665468
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat-taaaaggggtg 387  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||  |||| |||||    
T  12665348 tcttatacatgaaccaccttaggtggcatacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagataaaaaaagggtg 12665447  T
Q  388 atgatgtgatgtgaaattact 408  Q
    ||||| |||||| ||||||||    
T  12665448 atgatatgatgtaaaattact 12665468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15050206 - 15050124
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  15050206 ctaccattaaccaccacaaaaaccatcattaatcctcaccaaaaactagcaccagccaccacgagcatcaccaccaaaaacca 15050124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 42162602 - 42162721
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | || |||||||||||||| ||| |||||||||||||| ||||||| |||| ||||||    
T  42162602 tcttatacatgaaccaccttaggtgtcatacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtga 42162701  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  42162702 tgatatgatgtaaaattact 42162721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 44081784 - 44081903
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | ||||||||||||| ||| |||| ||||||||||||| ||||||| |||| ||||||    
T  44081784 tcttatacatgaaccatcttaggtggcatacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtga 44081883  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| | |||| ||||||||    
T  44081884 tgatataatgtaaaattact 44081903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 291 - 408
Target Start/End: Original strand, 33726017 - 33726135
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaag-gggtgat 389  Q
    ||||||||||||||  |||| || |||||||  |||||| | |||| ||||||||||||||||||||||||||||||| ||||||| ||||| || |||     
T  33726017 ttatacataaaccactttaggtggcatacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaagtggatgac 33726116  T
Q  390 gatgtgatgtgaaattact 408  Q
    |||||||||||||||||||    
T  33726117 gatgtgatgtgaaattact 33726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 25142910 - 25143031
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| |||||| ||||  || |||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||| || || |||  ||    
T  25142910 ctaccattaaccaccacaaaaatcaccactactcctcaccgaaaatcagcaccagccaccacgagtatcaccaccaaaaatcaacaccaaccaccatgag 25143009  T
Q  101 catcaccaccaagaaccaccac 122  Q
    |||||||||||| |||||||||    
T  25143010 catcaccaccaaaaaccaccac 25143031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 36189220 - 36189337
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||||||||| || ||||||| ||||||| | |||| |||||||||||| |||||||||| ||||||| ||||||| |||||| ||||    
T  36189220 tcttatacatgaaccatcttaggtggcatacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaggagtga 36189319  T
Q  389 tgatgtgatgtgaaatta 406  Q
    |||| |||| | ||||||    
T  36189320 tgatatgatataaaatta 36189337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 31318853 - 31318928
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |||||| ||||||||    
T  31318853 cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattact 31318928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 10203668 - 10203787
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| |||||||||  |||||||   ||||||||||||||||| ||| |||||| ||||||| ||||||| |||| |||||     
T  10203668 tcttatacatgaaccaccttaggtgacatacatccttttacatccacacacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaagggtgg 10203767  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  10203768 tgatatgatataaaattact 10203787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 23635861 - 23635931
Alignment:
Q  3 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 73  Q
    |||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  23635861 accattaacctccacaaaaaccaccattaatcctcaccaaaaatcagcaccagcctccacgagcatcacca 23635931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 15050170 - 15050070
Alignment:
Q  72 caccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    |||||||||| | || || || |||| |||||||||||||| |||||||||||||| || |||| |||||| |||| ||||||||||||  |||||||||    
T  15050170 caccaaaaactagcaccagccaccacgagcatcaccaccaaaaaccaccacgagcaccaccacaaaagacctagtaccagcaccaccattgaaaccacca 15050071  T
Q  172 c 172  Q
    |    
T  15050070 c 15050070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 18184557 - 18184676
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    ||||||| || ||||| ||||  |||||||||| |||||||   |||||| |||||||||| ||||  |||||||||||  ||||||| |||||||||||    
T  18184557 tcttatatatgaaccaccttaagtgacatacacccttttacatccacacatatttgtgacacgtggtgaaaacattgaatgaagagatgaaaaggggtga 18184656  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  18184657 tgatatgatataaaattact 18184676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 43186031 - 43186150
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| |||||  |||| || |||| |||||||||| |   ||||||||||||| |||||||||||||||||||| || |||| ||||  |||||    
T  43186031 tcttatacatcaaccactttaggtggcatatactcttttacacctgcacacatttgtgatatgtggcaaaaacattgaaagaaaagatgaaaaaaggtga 43186130  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||| | ||||||||    
T  43186131 tgatatgatataaaattact 43186150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 5515298 - 5515367
Alignment:
Q  10 accaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaa 79  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| |||| |||||||||| ||| ||||    
T  5515298 accaccacaaaaaccaccattaatcctcaccaaaaatcagcaccaaccaccacgagcatcatcacgaaaa 5515367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 38845165 - 38845091
Alignment:
Q  333 cacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaattact 408  Q
    |||||||| ||||||||||||| ||||| ||||||| || |||| || |||||||||||||||||| |||||||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagat-aagaggggtgatgatgtgatgagaaattact 38845091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 10408713 - 10408793
Alignment:
Q  3 accattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    |||||| |||||| ||||||||||| ||||  |||||| |||| || |||||||||| ||| ||| |||||||||||||||    
T  10408713 accattgaccaccacaaaaaccaccattaactctcacctaaaagcaacaccagccaccacgcgcagcaccaccaaaaacca 10408793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 31622 - 31547
Alignment:
Q  301 accatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagat 376  Q
    |||||||||| |  ||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| |||||||    
T  31622 accatcttaggtagcatacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaagagat 31547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5994493 - 5994575
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    ||||||||||||||| |||||| |||| |||| ||||||||||||  | ||||| |||| ||| ||| |||||| ||||||||    
T  5994493 ctaccattaaccaccacaaaaatcaccattaaccctcaccaaaaaataacaccaaccaccacgcgcagcaccacaaaaaacca 5994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 6443925 - 6444057
Alignment:
Q  29 ttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcat 128  Q
    |||| ||||| |||||| || || ||||||| | |||||||||||||||||||||          |||| |||| ||||||||| ||||||  ||||||     
T  6443925 ttaaccctcatcaaaaaacaacaacagccaccatgagcatcaccaccaaaaacca----------ccacgagcaccaccaccaa-aaccacttcgagcac 6444013  T
Q  129 catcacagaagacccagtatcagcaccaccatgaaaaccaccac 172  Q
    || |||| ||||||||  |||||| |||||||||||||||||||    
T  6444014 caccacaaaagacccaaaatcagccccaccatgaaaaccaccac 6444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 23635816 - 23635864
Alignment:
Q  6 attaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcacca 54  Q
    ||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  23635816 attaacctccacaaaaaccaccattaatcctcaccaaaaatcagcacca 23635864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 408
Target Start/End: Complemental strand, 42668951 - 42668850
Alignment:
Q  306 cttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 405  Q
    ||||| || ||||||| |||| || | |||||||| |||||||| |||||||||||||| ||| |||| | | | || ||||||| | ||||||||||||    
T  42668951 cttaggtggcatacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaagata-tgagagaggtgatggtatgatgtgaaatt 42668853  T
Q  406 act 408  Q
    |||    
T  42668852 act 42668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3763084 - 3763043
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaa 42  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  3763084 ctaccattaaccaccacaaaaaccatcattaatcctcaccaa 3763043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 46112131 - 46112012
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||||||||| ||||||||||  ||||||   |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  46112131 tcttatacatgaaccatcttaggtgacatacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtga 46112032  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  46112031 tgatatgatgtaaaattact 46112012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 21559565 - 21559684
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||| ||||||| ||||||| |||| |||| |    
T  21559565 tcttatacataaaccatcttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaagggtaa 21559664  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  21559665 tgatatgatgtaaaattact 21559684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 36749410 - 36749529
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| |||||||| |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  36749410 tcttatacatgaaccaccttagatgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 36749509  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  36749510 tgatatgatgtaaaattact 36749529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 291 - 408
Target Start/End: Complemental strand, 39467286 - 39467169
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||| ||||||||| | |||||||||||||| ||||||| | |||||| |||||||||||||| |||||| ||||||| ||||||| ||||||||||| |    
T  39467286 ttatccataaaccaccatagatgacatacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatgaaaaggggtgagg 39467187  T
Q  391 atgtgatgtgaaattact 408  Q
    ||||||| ||||||||||    
T  39467186 atgtgatatgaaattact 39467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 34750085 - 34749966
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||| |||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  34750085 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 34749986  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  34749985 tgatatgatgtaaaattact 34749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 36370525 - 36370406
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  36370525 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtga 36370426  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  36370425 tgatatgatgtaaaattact 36370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 43999993 - 44000112
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || |||||||  |||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  43999993 tcttatacatgaaccaccttaggtgtcatacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 44000092  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  44000093 tgatatgatgtaaaattact 44000112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 39072458 - 39072350
Alignment:
Q  291 ttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatg 390  Q
    |||||||| || || |||||||||||||||| ||||||| | |||| ||||||||||||||||||| ||||||| ||| ||||||| |||| ||||||||    
T  39072458 ttatacatgaatcaccttagatgacatacacccttttacacccacatacatttgtgacatgtggcataaacattaaaagaagagatgaaaatgggtgatg 39072359  T
Q  391 atgtgatgt 399  Q
    |||||||||    
T  39072358 atgtgatgt 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 22894684 - 22894803
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| || |||    
T  22894684 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatga 22894783  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| ||||||  |||||||    
T  22894784 tgatatgatgtataattact 22894803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 31699226 - 31699333
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaaccaacatcatccgccacaag 100  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||| || || |||| ||    
T  31699226 ctaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcagcaccagccaccacgagcatcacta-cgaaaaccaacaccagccaccacgag 31699324  T
Q  101 catcaccac 109  Q
    || ||||||    
T  31699325 caccaccac 31699333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 51339968 - 51339851
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||||||||| ||||| || ||||||  ||||||| | ||||||  ||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  51339968 tcttatacataaaccaccttaggtggcatacatccttttacacccacaca--tttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 51339871  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  51339870 tgatatgatgtaaaattact 51339851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 30735682 - 30735564
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    ||||||| || ||||| |||||||| ||||||| ||||||| | ||||||||| ||||||| |||||||||||||||||| |||| | ||||| ||||||    
T  30735682 tcttatatatgaaccaccttagatggcatacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaagata-taaaaagggtga 30735584  T
Q  389 tgatgtgatgtgaaattact 408  Q
    |||| |||||| ||||||||    
T  30735583 tgatatgatgttaaattact 30735564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 29460664 - 29460756
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 381  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29460664 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29460756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 29471516 - 29471608
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 381  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  29471516 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaagagatgaaaa 29471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 38231297 - 38231381
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaaga 373  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  38231297 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaaga 38231381  T

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Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 37067076 - 37067129
Alignment:
Q  235 accccaaccataattcttgcaaagtaacccatgttttgtagctcgagctggcgg 288  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37067076 accccaaccataattcttgcaaagtaacccatgttttgtagctccagctggcgg 37067129  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 20856334 - 20856221
Alignment:
Q  293 atacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgat 392  Q
    |||||| |||||  |||| || ||||||| ||||||| | || ||||||||||||||||||||||||||||||| |||||| | ||||| || |||||||    
T  20856334 atacatgaaccactttaggtggcatacacccttttacacccatacacatttgtgacatgtggcaaaaacattga-aaaagata-taaaaaggatgatgat 20856237  T
Q  393 gtgatgtgaaattact 408  Q
    ||||| | ||||||||    
T  20856236 gtgatataaaattact 20856221  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 18269954 - 18269875
Alignment:
Q  4 ccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaaaaacca 83  Q
    ||||| |||||| ||||||||||| |||| | |||| ||||| || |||||||||| ||| |||||||||||||||||||    
T  18269954 ccattgaccaccacaaaaaccaccattaaccatcactaaaaaacaacaccagccaccacgcgcatcaccaccaaaaacca 18269875  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 53638165 - 53638255
Alignment:
Q  315 catacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtgatgatgtgatgtgaaatt 405  Q
    ||||||| |||| || | |||||||| | ||||||||||| |||||||| |||| ||||||| | | |||||||||||||||||| |||||    
T  53638165 catacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgtgatgtaaaatt 53638255  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 31699315 - 31699373
Alignment:
Q  116 ccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaa 174  Q
    |||||||||||| || |||| |||||||| || || |||||||||| ||||||||||||    
T  31699315 ccaccacgagcaccaccacaaaagacccaataccaacaccaccatggaaaccaccacaa 31699373  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 29820483 - 29820390
Alignment:
Q  292 tatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaagggg 385  Q
    |||||||| |||| ||||| || ||||||| |||| || | |||| ||| |||||| |||| ||||||||||| ||| ||||||| | ||||||    
T  29820483 tatacatagaccaccttaggtggcatacacactttgacacccacatacaattgtgagatgtagcaaaaacattaaaagaagagatgagaagggg 29820390  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 18269863 - 18269807
Alignment:
Q  115 accaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccacca 171  Q
    ||||||||||||  || |||| ||||||||  |||| ||||||||||||||||||||    
T  18269863 accaccacgagccccaccacaaaagacccaaaatcaacaccaccatgaaaaccacca 18269807  T

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Target: scaffold0062 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 6722 - 6844
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaaggggtga 388  Q
    |||||||||| ||||| ||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtga 6821  T
Q  389 tgatgtgatgtgaaattacttaa 411  Q
    |||| |||||| |||||||||||    
T  6822 tgatatgatgtaaaattacttaa 6844  T

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Target: scaffold0092 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 23272 - 23348
Alignment:
Q  99 agcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatcagcaccaccatgaaaaccaccacaaa 175  Q
    |||||||| ||||| |||||||||||||| || |||| |||||| |||||||||||||||||| |||||||||||||    
T  23272 agcatcacaaccaaaaaccaccacgagcaccaccacaaaagacctagtatcagcaccaccatggaaaccaccacaaa 23348  T

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Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 87350 - 87259
Alignment:
Q  289 tcttatacataaaccatcttagatgacatacactcttttacgctcacacacatttgtgacatgtggcaaaaacattgaaaaaagagattaaaa 381  Q
    |||||||||| ||||| ||||| || ||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  87350 tcttatacatgaaccaccttaggtggcatacacccttgtacac-cacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaa 87259  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2946 - 3021
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcaccaccaa 77  Q
    ||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||| |||| |||||| ||||||||||    
T  2946 ctaccattaaccaccacaaaatc-accattactcctcaccaaaaaccagcaccaaccaccacgagcttcaccaccaa 3021  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 42912 - 42826
Alignment:
Q  64 agcatcaccaccaaaaaccaacatcatccgccacaagcatcaccaccaagaaccaccacgagcatcatcacagaagacccagtatca 150  Q
    |||||||||||||||||| |||| |||||  |||  |||||||| |||| |||||||||||| | || |||| || ||| |||||||    
T  42912 agcatcaccaccaaaaactaacaccatccatcacgcgcatcaccgccaaaaaccaccacgagtaccaccacaaaaaacctagtatca 42826  T

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Target: scaffold0725 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 1080 - 1121
Alignment:
Q  18 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 59  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  1080 aaaaaccaccagtaatcctcaccaaaaaccagcacccgccac 1121  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 26996 - 27037
Alignment:
Q  18 aaaaaccaccgttaatcctcaccaaaaaccagcaccagccac 59  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  26996 aaaaaccaccagtaatcctcaccaaaaaccagcacccgccac 27037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31223 - 31295
Alignment:
Q  1 ctaccattaaccaccccaaaaaccaccgttaatcctcaccaaaaaccagcaccagccacaacgagcatcacca 73  Q
    ||||||||||||||| |||||| |||| |||| | |||| |||  ||| ||||| |||| |||||||||||||    
T  31223 ctaccattaaccaccacaaaaatcaccattaaccatcacaaaagtccaccaccacccaccacgagcatcacca 31295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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