View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16038_high_7 (Length: 210)
Name: NF16038_high_7
Description: NF16038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16038_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 14780981 - 14781090
Alignment:
| Q |
88 |
tatattacagcacatctcatacgtgactcaatttaataagctcccagcaaactttaggagcagatttcttgtgataaaaaaggtataccaaacttaatta |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14780981 |
tatattacagcacatctcatacgtgactcaatttaataagctcccagcaaactttaagagcagatttcttgtgataaaaaaggtataccaaacttaatta |
14781080 |
T |
|
| Q |
188 |
agatcaactt |
197 |
Q |
| |
|
|||||||||| |
|
|
| T |
14781081 |
agatcaactt |
14781090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 14780632 - 14780701
Alignment:
| Q |
16 |
atatatatagtactaggcactagaaataatctctggtgtagaattcactatcggaagcacctaattacta |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14780632 |
atatatatagtactaggcactagaaataatctctggtgtagaattcactatcgaaagcacctaattacta |
14780701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University