View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16038_low_2 (Length: 487)
Name: NF16038_low_2
Description: NF16038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16038_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 145 - 469
Target Start/End: Complemental strand, 28527114 - 28526789
Alignment:
| Q |
145 |
gattggattatacaaactcaaataatgannnnnnnnnn-cctttgtaaaagcaaaaatgttaactgtgttgatatctccgattaggctatgagcaaagac |
243 |
Q |
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| T |
28527114 |
gattggattatacaaactcaaataatgatttttttttttcctttgtaaaagcaaaaatgttaactgtgttgatatctccgattaggctatgagcaaagac |
28527015 |
T |
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| Q |
244 |
ataaatgatttgagcgcaacatcttcacttcaaaaccctaagacaatgagtatatgaatcgcctcactttgttgttcaacacttacatatttatttaatg |
343 |
Q |
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| T |
28527014 |
ataaatgatttgagcgcaacatcttcacttcaaaaccctaagacaatgagtatatggatcgcctcactttgttgttcaacacttacatatttatttaatg |
28526915 |
T |
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| Q |
344 |
cgagacttctaactcacttctattttccaacactttcaccagaacttgagctgcaacaactaatggatcatgcttggataagtaatggggtatttgggta |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
28526914 |
cgagacttctaactcacttctattttccaacactttcaccagaacttgagctgcaacaactaatggatcatgcttggataagtaatgaggtatttaggta |
28526815 |
T |
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| Q |
444 |
gtttgtacagtatcattcaaggtatg |
469 |
Q |
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| T |
28526814 |
gtttgcacagtatcattcaaggtatg |
28526789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 40369509 - 40369559
Alignment:
| Q |
55 |
ttactccaactttggtcactataagagcaccaaaacttttctcaataacca |
105 |
Q |
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| T |
40369509 |
ttactccatctttggtcactttaggagcaccaaaactttgctcaataacca |
40369559 |
T |
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