View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16038_low_6 (Length: 307)
Name: NF16038_low_6
Description: NF16038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16038_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 2926634 - 2926430
Alignment:
| Q |
17 |
cttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926634 |
cttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataat |
2926535 |
T |
|
| Q |
117 |
catggcatcagttaaggatagccacaaaatttaatctcaatagaagtttttgaacaaattagtgttgtaacatgaaaatgagcatgatttcttacaaact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
2926534 |
catggcatcagttaaggatagccacaaaatttaatctcaatagaagtatttgaacaaattagtgttgtatcatgaaagtgagcatgatttcttacaaaat |
2926435 |
T |
|
| Q |
217 |
attga |
221 |
Q |
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||||| |
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| T |
2926434 |
attga |
2926430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 2921227 - 2921028
Alignment:
| Q |
15 |
ttcttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttata |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2921227 |
ttcttcaagaatgtctactaggctaaagttattcttgaaataat--actttttcgttaaatataatgaaacctcactttgctaaa-aaatttggtttata |
2921131 |
T |
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| Q |
115 |
atcatggcatcagttaaggatagccacaaaatttaatctcaatagaagtttttgaacaaattagtgttgtaacatgaaaatgagcatgatttcttacaaa |
214 |
Q |
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| T |
2921130 |
atcatggtatcggttaacgacaaccaaaaaaattaacctcaatagaagtatttgaacaaattagcgt--tatcatgaaagtgagcttgatttcttacaaa |
2921033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 2920764 - 2920689
Alignment:
| Q |
218 |
ttgaaaacatacaacataaatatatttattacaactgaaagttagataagttcagataaaatagatacaattcact |
293 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
2920764 |
ttgaaaacatacaacatgaatatatttattacaactgaaatttagataagttcagataaaatagatacaatacact |
2920689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 2921916 - 2921811
Alignment:
| Q |
39 |
aaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataatcatggcatcagttaaggatagc |
138 |
Q |
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||||| ||||||| |||| ||||||||||| |||||| |||||||| ||||||||| ||||||| |||| |||||| |||||| |||| ||||||| | | |
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| T |
2921916 |
aaagtgattcttgtaatactcaactttttcatgaaatgtaatgaaatctcactttggtaaagaattttgatttatattcatggtatcatttaaggacaac |
2921817 |
T |
|
| Q |
139 |
cacaaa |
144 |
Q |
| |
|
|||||| |
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|
| T |
2921816 |
cacaaa |
2921811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 2927399 - 2927331
Alignment:
| Q |
53 |
aataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataatcatgg |
121 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||||||| ||||||| ||||||||||| |||||| |
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|
| T |
2927399 |
aataatcaactttttcatgaaatgtaatgaaatctcactttggtaaagaattttggtttatattcatgg |
2927331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 2926144 - 2926101
Alignment:
| Q |
233 |
ataaatatatttattacaactgaaagttagataagttcagataa |
276 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
2926144 |
ataaatatatttattacaactgaaatttagataagtttagataa |
2926101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 2926108 - 2926074
Alignment:
| Q |
259 |
ttagataagttcagataaaatagatacaattcact |
293 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |
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| T |
2926108 |
ttagataagttcagataaaatagatacaatacact |
2926074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 31346590 - 31346639
Alignment:
| Q |
239 |
atatttattacaactgaaagttagataagttcagataaaatagatacaat |
288 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
31346590 |
atatatattacaactgaaatttagataagttcggataaaatagatacaat |
31346639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 31357232 - 31357281
Alignment:
| Q |
239 |
atatttattacaactgaaagttagataagttcagataaaatagatacaat |
288 |
Q |
| |
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|||| |||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
31357232 |
atatatattacaactgaaatttagataagttcggataaaatagatacaat |
31357281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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