View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16038_low_9 (Length: 260)
Name: NF16038_low_9
Description: NF16038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16038_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 53462136 - 53462368
Alignment:
| Q |
18 |
tttaccagacaagggtcaataattttgagattaatcaacattagcctgcatatacatggaaccaagttattagtgtaggtttgttcatgtacaaaaggaa |
117 |
Q |
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| T |
53462136 |
tttaccagacaagcgtcaataattttgagattaatcaacattagcctgcatatacatggaaccaagttattagtgtaggtttgttcatgtacaaaaggaa |
53462235 |
T |
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| Q |
118 |
acattcgattagattgagtagatattgtatagttagcacaagaattaatgtttcctaaggtttgaagtcttaagaccaagtgactgaccatacggaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53462236 |
acattcgattagattgagtagatattgtatagttagcacaagaattaatgtttcctaaggtttgaagtcttaagaccaagtgactgaccatacggaaaca |
53462335 |
T |
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| Q |
218 |
ggacgtagtttcttagttcattttgtgtctgtg |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53462336 |
ggacgtagtttcttagttcattttgtgtctgtg |
53462368 |
T |
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