View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16039_high_1 (Length: 264)
Name: NF16039_high_1
Description: NF16039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16039_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 8079991 - 8079753
Alignment:
| Q |
10 |
tcatcagttattaatctttctgcagcgttttctgatttcaccccttgatcctgttaaaggagtaatgtttcccatcttaaccatggacttggcaaattgt |
109 |
Q |
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| T |
8079991 |
tcatcagttattaatctttctgcagcgttttctgatttcaccccttgatcctgttaagggagtaatgtttcccatcttaaccatggacttggcaaattgc |
8079892 |
T |
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| Q |
110 |
tcaaagaaaagatcattgctttctgcatactttttcactaaatctgcagatacttgattctttgtcaacagaatttcatcagaacttaggagacccttgt |
209 |
Q |
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| T |
8079891 |
tcaaagaaaagatcattgctttctgcatactttttcactaaatctgcagatacttgattctttgtcaacagaatttcatcagaacttaggagacccttgt |
8079792 |
T |
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| Q |
210 |
tggccaataaattcttgtagtagttgttgtcgaatttta |
248 |
Q |
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| T |
8079791 |
tggccaataaattcttgtagtagttgttgtcgaatttta |
8079753 |
T |
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Back To:
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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 247
Target Start/End: Original strand, 32580373 - 32580567
Alignment:
| Q |
53 |
cttgatcctgttaaaggagtaatgtttcccatcttaaccatggacttggcaaattgttcaaagaaaagatcattgctttctgcatactttttcactaaat |
152 |
Q |
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| T |
32580373 |
cttgaacctgtcaaaggagatatatttcccatcttgatcatagacttagcaaattgctcaaagaaaagatcatttctctcagcatacaatttcaccaact |
32580472 |
T |
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| Q |
153 |
ctgcagatacttgattctttgtcaacagaatttcatcagaacttaggagacccttgttggccaataaattcttgtagtagttgttgtcgaatttt |
247 |
Q |
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| T |
32580473 |
cagctgattcttgattctttgtcaacagaatttcatcagagctcaatagtcccttgtaagccaataggttcttgaagtaattgttatcaaatttt |
32580567 |
T |
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