View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16039_low_3 (Length: 249)
Name: NF16039_low_3
Description: NF16039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16039_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 25526419 - 25526183
Alignment:
| Q |
7 |
gtgatatatgctttttattgttgcttgttcctgctaaaagcaagacacctctcccatttgcatcaaaagtttcttctcnnnnnnngaaactgcatcctta |
106 |
Q |
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| T |
25526419 |
gtgatatatggtttttattgttgcttgttcctgctaaaagtaagacacctctcacatttgcatcaaaagtttcttctcaaataaagaaactgcatcctta |
25526320 |
T |
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| Q |
107 |
taaacattagaacagattaagtttctttgattaggaataagacgcacaaaatcatggtcaatggtttctgtgtcatctttagtaattgccaatgttcatg |
206 |
Q |
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| T |
25526319 |
taaacattagaacagagtaagtttctttgattaggaataaaacgcacaaaatcagggtcaatggtttctgtgtcatcttcagtaattgccaatgttcatg |
25526220 |
T |
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| Q |
207 |
actatgaatggaagagtcaattagagaaacatagctg |
243 |
Q |
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| T |
25526219 |
actatgaatggaagagtcaattagagaaacatagctg |
25526183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 25534410 - 25534188
Alignment:
| Q |
18 |
tttttattgttgcttgttcctgctaaaagcaagacacctctcccatttgcatcaaaagtttcttctcnnnnnnngaaactgcatccttataaacattaga |
117 |
Q |
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| T |
25534410 |
tttttattgttgtttgttcctgctaaaagtaagacacctctcacatttgcagcaaagttttcttctcaaatgaagaaactgcatccttataaacatcaga |
25534311 |
T |
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| Q |
118 |
acagattaagtttctttgattaggaataagacgcacaaaatcatggtcaatggtttctgtgtcatctttagtaattgccaatgttcatgactatgaatgg |
217 |
Q |
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| T |
25534310 |
acagagtaagtttctttgattaggaataaaacgcacaaaatcacggtcaatggtttctgtgccatcttcaataattgccaatgttcatgactatgaatgg |
25534211 |
T |
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| Q |
218 |
aagagtcaattagagaaacatag |
240 |
Q |
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| T |
25534210 |
aagagtcaattagagaaacatag |
25534188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 25516096 - 25516223
Alignment:
| Q |
111 |
cattagaacagattaagtttctttgattaggaataagacgcacaaaatcatggtcaatggtttctgtgtcatctttagtaattgccaatgttcatgacta |
210 |
Q |
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| T |
25516096 |
cattataacaaagtaagtttatttgattaggattaaaacgcacaaaatcatggtcaatgttttctgcgtcatcatcagtaatttccaaacttcatgacta |
25516195 |
T |
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| Q |
211 |
tgaatggaagagtcaattagagaaacat |
238 |
Q |
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| T |
25516196 |
tgaatcgaagagtcaattagaaaaacat |
25516223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 25540802 - 25540730
Alignment:
| Q |
157 |
atcatggtcaatggtttctgtgtcatctttagtaattgccaatgttcatgactatgaatggaagagtcaatta |
229 |
Q |
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| T |
25540802 |
atcatggtcaatgatttctgtgtcatcatcagtaatttccaatcttcatgactacgaatgaaagagtcaatta |
25540730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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