View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16039_low_4 (Length: 238)
Name: NF16039_low_4
Description: NF16039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16039_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 52422060 - 52421852
Alignment:
| Q |
19 |
attctcccctacaaaagaggaagtggaagaaatgagttgcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52422060 |
attctcccctacaaaagaggaagtggaagaaatgagttgcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctc |
52421961 |
T |
|
| Q |
119 |
actgtggtcttttcacaagtgggtgaactattgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52421960 |
actgtggtcttttcacaagtgggtgaactattgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttcattg |
52421861 |
T |
|
| Q |
219 |
taatattct |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
52421860 |
taatattct |
52421852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 14151043 - 14151237
Alignment:
| Q |
19 |
attctcccctacaaaagaggaagtggaagaaatgagttgcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctc |
118 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||||| || ||| |||||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
14151043 |
attctcccctacaaaagaggaaattggagaaatgagttgcatggttgaacgagggg--ctgaagcttgcaggacgtggacgcttggagcgtgtacgtatc |
14151140 |
T |
|
| Q |
119 |
actgtggtcttttcacaagtgggtgaactattgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttca |
215 |
Q |
| |
|
| ||||||||||| | ||||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14151141 |
attgtggtctttttatgagtgggtgaactactgctttcatggagcacaaaatcctccttgtagactgatgatgatggttgttgctccacttttttca |
14151237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 14150625 - 14150437
Alignment:
| Q |
27 |
ctacaaaagaggaagtggaagaaatgagttgcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggt |
126 |
Q |
| |
|
||||||| ||| || ||| ||||||| |||||||||||||| || | | |||||||||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
14150625 |
ctacaaaggagaaaatgggagaaatgggttgcatggttgaacgaggtgggctgaaggttgcaagatgtggacgcttggtgcgtgtacgtctcattgtggt |
14150526 |
T |
|
| Q |
127 |
cttttcacaagtgggtgaactattgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttca |
215 |
Q |
| |
|
||||||| || ||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
14150525 |
cttttcatgagcaggtgaactactgctttcaaggagcacaaaatcctccttgttgaccgatgatgatggttgttgctccacttttttca |
14150437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 24482321 - 24482488
Alignment:
| Q |
46 |
agaaatgagttgcatggttgaatgatgggagctgaaggttgcaagacgtggacgcttggagcgtgtacgtctcactgtggtcttttcacaagtgggtgaa |
145 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| ||||| || ||| ||||||||||||| |||||||||||| ||| |||||| ||| |||||||||| |
|
|
| T |
24482321 |
agaaatgagttgcatggttgaacga-ggaagctgcaggtt-catgacatggacgcttggagtgtgtacgtctcattgtagtctttccaccagtgggtgaa |
24482418 |
T |
|
| Q |
146 |
ctattgcttttagggagcacaaaatcctccttgttgactgatgatgatggatgttgctccacttttttca |
215 |
Q |
| |
|
||| |||||| | ||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
24482419 |
ctactgctttcaaggagcaccaaatcctccttgttgaccgatgatgatggttgttgcttcacttttttca |
24482488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University