View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_high_1 (Length: 516)
Name: NF1603_high_1
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_high_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 16644431 - 16644144
Alignment:
| Q |
63 |
cctaattgaatatatggatatgtatgtggtcccgactaatcttccaaatcatgcagaaatta---cacttggtagggataaacaatatcacaaaccactt |
159 |
Q |
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| T |
16644431 |
cctaattgaatttatggatatgtatgtggtcccgactaatcttccaaatcatgcagatattattacacgtggtagggataaacaatatcacaaaccactt |
16644332 |
T |
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| Q |
160 |
atgtcattagaaaaagttcgatcaaaattcaaagacatgatcttgcaagattatattgcataataattaaactatgtacgtgtgaaggtaaaccaatgaa |
259 |
Q |
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| T |
16644331 |
atgtcattagaaaaagttcgatcaaaattcaaagacatgatcttgcaagattatattgcataataattaaactatgtacgtgtgaaggtaaaccaatgaa |
16644232 |
T |
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| Q |
260 |
tttgttagaaaccactagacaatttggtctgatagagatgtcaactaataaagttga-ggcctttcaggaagaaaaaagactaattat |
346 |
Q |
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| T |
16644231 |
tttgttagaaaccactagacaatttggttagatagagatgtcaactaataaagttaagggcctttcagaaagaaaaacgactaattat |
16644144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 383 - 516
Target Start/End: Original strand, 4924325 - 4924458
Alignment:
| Q |
383 |
gatacgcgtgataaaagttaacagttgtaaactttcaatcttcttaagcacaaggaaggatgatgacacctgctgccaaactgcaaaatacgtgcagaga |
482 |
Q |
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| T |
4924325 |
gatacgcgtgataaaagttcacagttgtaaactttcaatcttcttaagcacaaggaaggatgatgacacctgctgccaaactgcaaaatacgtgcagaga |
4924424 |
T |
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| Q |
483 |
tttgtaagaataaattatactgtaaataaacttc |
516 |
Q |
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| T |
4924425 |
tttgtaagaataaattatactgtaaataaacttc |
4924458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 4914004 - 4914067
Alignment:
| Q |
438 |
aaggatgatgacacctgctgccaaactgcaaaatacgtgcagagatttgtaagaataaattata |
501 |
Q |
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| T |
4914004 |
aaggatgatgacacctgctgctagactgcaaaagaagtgcggagatttgtaagaataaattata |
4914067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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