View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1603_high_11 (Length: 218)
Name: NF1603_high_11
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_high_11 |
 | |
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| [»] chr5 (6 HSPs) |
| |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1758237 - 1758454
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758237 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcaggaga |
1758336 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1758337 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtat |
1758436 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1758437 |
gtgttgaaacttgtgttt |
1758454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 29568380 - 29568163
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29568380 |
tcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtaga |
29568281 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
29568280 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcattggtat |
29568181 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
29568180 |
gtgttgaaacatgtgttt |
29568163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 29168344 - 29168561
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29168344 |
tcttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtaga |
29168443 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
29168444 |
tgtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaatggtat |
29168543 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
29168544 |
gtgttgaaaattgtgttt |
29168561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 27918747 - 27918956
Alignment:
| Q |
9 |
gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc |
108 |
Q |
| |
|
||||||| || ||||||||||| | ||||||||||||||||||||| |||||| ||| |||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
27918747 |
gctgtgtatccgatccatgcactttgccagatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatc |
27918846 |
T |
|
| Q |
109 |
tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtctgtgttgaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27918847 |
tgaagttattgatccttctgaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtgtgtgttgaa |
27918946 |
T |
|
| Q |
209 |
acttgtgttt |
218 |
Q |
| |
|
|||||||||| |
|
|
| T |
27918947 |
acttgtgttt |
27918956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 29425385 - 29425590
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29425385 |
tcttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagtaga |
29425484 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||| |||| | |
|
|
| T |
29425485 |
tgtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcattggtat |
29425584 |
T |
|
| Q |
201 |
gtgttg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
29425585 |
gtgttg |
29425590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38157359 - 38157570
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||| ||||||||||| ||| |||||| || ||| ||||||||||| ||||| |||||| |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
38157359 |
tcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcaggaga |
38157456 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| || ||||||||||||||||||| | |
|
|
| T |
38157457 |
tgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggtat |
38157556 |
T |
|
| Q |
201 |
gtgttgaaacttgt |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38157557 |
gtgttgaaacttgt |
38157570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 18986189 - 18986406
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986189 |
tcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggaga |
18986288 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
18986289 |
tgtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggtat |
18986388 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
18986389 |
gtgttgaaacttgtgttt |
18986406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 27462089 - 27462306
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
27462089 |
tcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcaga |
27462188 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27462189 |
tgtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtat |
27462288 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27462289 |
gtgttgaaacttgtgttt |
27462306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 27521346 - 27521129
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
27521346 |
tcttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcagcaga |
27521247 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
27521246 |
tgtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaatggtat |
27521147 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27521146 |
gtgttgaaacttgtgttt |
27521129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 27482228 - 27482445
Alignment:
| Q |
1 |
tcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
27482228 |
tcttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcaga |
27482327 |
T |
|
| Q |
101 |
tgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtct |
200 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27482328 |
tgtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtat |
27482427 |
T |
|
| Q |
201 |
gtgttgaaacttgtgttt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27482428 |
gtgttgaaacttgtgttt |
27482445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 25518581 - 25518790
Alignment:
| Q |
9 |
gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc |
108 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||| | || ||||| |||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
25518581 |
gctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatcaggagatgtatatc |
25518680 |
T |
|
| Q |
109 |
tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtctgtgttgaa |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25518681 |
tgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
25518780 |
T |
|
| Q |
209 |
acttgtgttt |
218 |
Q |
| |
|
|||||||||| |
|
|
| T |
25518781 |
acttgtgttt |
25518790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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