View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1603_high_3 (Length: 416)
Name: NF1603_high_3
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 44661231 - 44660841
Alignment:
| Q |
19 |
gatcactcatacacattcctttgaatcgatggctctttgactcacagtgtcttccttcagtttgcaccatcatctctgcaatgatttatcaataggtcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44661231 |
gatcactcatacacattcctttgaatcgatggctctttgactcacagtgtcttccttcagtttgcaccatcatctctgcaatgatttatcaatagctcat |
44661132 |
T |
|
| Q |
119 |
taatatgattaatataaacatattttactaaaaacaatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44661131 |
taatatgattaatataaacatattttactaaaaacaatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataa |
44661032 |
T |
|
| Q |
219 |
gcaaaatgaagaaaaatccaaagcgtgtcttgttcatgtttactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44661031 |
gcaaaatgaagaaaaatccaaagcgtgtcttgttcatgattactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtattt |
44660932 |
T |
|
| Q |
319 |
ggcactcgtatctatttatagaggtagagggagtaaacatgaaaaaactaagtaaattaatgtattagtgactacgagaatgagaataata |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44660931 |
ggcactcgtatctatttatagaggtagagggagtaaacatgaaaaaactaagtaaattaatgtattagtgactacgagaatcagaataata |
44660841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 44650788 - 44650857
Alignment:
| Q |
192 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatgtttac |
261 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
44650788 |
aagacttactagaagcaaggagaataaacaaaatgaataaaaccccaaagcgtgtcttgttcatgattac |
44650857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 44653915 - 44653851
Alignment:
| Q |
192 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatg |
256 |
Q |
| |
|
||||||||| | ||| ||| |||||||| | ||||||||||||||||||||| | ||||||||| |
|
|
| T |
44653915 |
aagacttaccaaaagtaagaagaataagtagaatgaagaaaaatccaaagcgagctttgttcatg |
44653851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University