View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1603_low_1 (Length: 596)
Name: NF1603_low_1
Description: NF1603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1603_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 7 - 578
Target Start/End: Original strand, 32399700 - 32400271
Alignment:
| Q |
7 |
gcagcacagacacaattacataggacttagaaattcataatgacacgtcgcaactttaacatgattgtgctagtgatccgatctagtgcattcaagcctg |
106 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32399700 |
gcagcacagacacaatcacataggacttagaaattcataatgacacgtcgcaactttaacatgattgtgctagtgatccaatctagtgcattcaagcctg |
32399799 |
T |
|
| Q |
107 |
ctacatcaacaattagcaagaaagaaaaacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgccagcc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32399800 |
ctacatcaacaattagcaagaaagaaaaacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgccagcc |
32399899 |
T |
|
| Q |
207 |
aactcttggattcttaccaaactcatctttgataaattgatgcccaagagtggtctgatcaatcaggtcaatgtaatgcggggtggcctcgtcatgcatg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32399900 |
aactcttggattcttaccaaactcatctttgataaattgatgcccaagagtggtctgatcaatcaggtcaatgtaatgcggggtggcctcgtcatgcatg |
32399999 |
T |
|
| Q |
307 |
cacataccaccatttcttcnnnnnnnnnnnnncaacaataacatgataatcaaattcaaaagtcaccaacttgcatctaaatctaatctatgtagaacca |
406 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32400000 |
cacataccaccatttcttcaaaaaaccaaaaacaacaataacataataatcaaattcaaaagtcaccaacttgcatctaaatctaatctatgtagaacca |
32400099 |
T |
|
| Q |
407 |
ttaatcatggaaatccattggattccctgcaaccaaaataacacaaagtcactaaatgacaatcaaacagcttgcattcaaaaatctgatttatccaact |
506 |
Q |
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| T |
32400100 |
ttaatcatggaaatccattggattccctgcaaccaaaataacacaaagtcactaaatgacaatcaaacagcttgcattcaaaaatctgatttatccaact |
32400199 |
T |
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| Q |
507 |
taaaatatgaactgtctgatcttcatctaaagattttgacttactaattttggtgaattttaaagtacatgc |
578 |
Q |
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| T |
32400200 |
taaaatctgaactgtctgatcttcatctaaagattttgacttactaattttggtgagttttaaagtacatgc |
32400271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 284
Target Start/End: Original strand, 32385496 - 32385617
Alignment:
| Q |
163 |
taagcctgaactgcagaatggccaaacggatcaatctgccagccaactcttggattcttaccaaactcatctttgataaattgatgcccaagagtggtct |
262 |
Q |
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|||||||| || |||||||| |||||||| ||||| ||||| |||| ||||||| || | | ||||| ||||| | |||| | || ||||| || |||| |
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| T |
32385496 |
taagcctgcacagcagaatgtccaaacgggtcaatttgccaaccaattcttggagtcaaatcgaactcctctttcagaaatcggtgtccaagtgtagtct |
32385595 |
T |
|
| Q |
263 |
gatcaatcaggtcaatgtaatg |
284 |
Q |
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| T |
32385596 |
gatcaatcatgtctatgtaatg |
32385617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 323
Target Start/End: Original strand, 45067569 - 45067758
Alignment:
| Q |
134 |
aacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgccagccaactcttggattcttaccaaactcatc |
233 |
Q |
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||||| || ||||||| ||||| | |||||| ||||| ||||||||||| ||||| |||||||| ||||| || | ||||||| | | || || | || |
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| T |
45067569 |
aacaaaatggtacctctgctcccaacaagtaggcctgcactgcagaatgtccaaatggatcaatttgccatcctattcttggagttatcccgaatacttc |
45067668 |
T |
|
| Q |
234 |
tttgataaattgatgcccaagagtggtctgatcaatcaggtcaatgtaatgcggggtggcctcgtcatgcatgcacataccaccatttct |
323 |
Q |
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| T |
45067669 |
tttgatgaatcgatgtccaagggttgtctgatcaatcatgtcaatgtaatgtgcagcagcctcatcgtgcatacacataccaccatttct |
45067758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 29816255 - 29816218
Alignment:
| Q |
506 |
ttaaaatatgaactgtctgatcttcatctaaagatttt |
543 |
Q |
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||||||||| ||||||||||||||||||||||| |||| |
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| T |
29816255 |
ttaaaatataaactgtctgatcttcatctaaaggtttt |
29816218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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